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nextflow-software

nextflow

Nextflow is a bioinformatics workflow manager that enables the development of portable and reproducible workflows. It supports deploying workflows on a variety of execution platforms including local, HPC schedulers, AWS Batch, Google Genomics Pipelines, and Kubernetes. Additionally, it provides support for manage your workflow dependencies through built-in support for Conda, Docker, Singularity, and Modules.

Information

Usage

See versions of nextflow which are available:

$ module avail nextflow

Load one version into your environment and run it:

$ module load nextflow/20.04.1
$ nextflow

See the nextflow documentation for information about how to use it.

Installation

Notes from the sysadmin during installation:

$ sudo mkdir -p /export/apps/nextflow/20.04.1/bin
$ sudo wget https://github.com/nextflow-io/nextflow/releases/download/v20.04.1/nextflow-20.04.1-all -O /export/apps/nextflow/20.04.1/bin/nextflow
$ sudo chmod +x /export/apps/nextflow/20.04.1/bin/nextflow
nextflow-software.txt · Last modified: 2020/07/27 10:55 by aorth