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netmhcpan-software

netmhcpan

NetMHCpan uses Artificial Neural Networks(ANN) to predict peptides bindings to MHC molecules.

Information

Usage

See versions of netmhcpan which are available:

$ module avail netmhcpan

Installation

Notes from the sysadmin during installation:

** Request netMHCpan from http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?netMHCpan
tar -xvf netMHCpan-2.8a.Linux.tar.gz
sudo mkdir -p /export/apps/netmhcpan/2.8

- set env. vars in netMHCpan tcsh script
setenv  NMHOME  /export/apps/netmhcpan/2.8/

sudo cp -r netMHCpan-2.8/* /export/apps/netmhcpan/2.8

Running

$ module load netmhcpan/2.8
$ nethmcpan -h

See netmhcpan manual pages for a complete documentation of netmhcpan command.

netmhcpan-software.txt · Last modified: 2015/09/10 17:35 by joguya