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mummer-software [2017/09/19 15:45]
aorth
mummer-software [2019/07/09 17:01] (current)
aorth
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 ====== MUMmer ====== ====== MUMmer ======
-MUMmer is a versatil ​alignment tool for DNA and protein sequences.+MUMmer is a versatile ​alignment tool for DNA and protein sequences.
  
 ===== Information ===== ===== Information =====
  
-  * Latest version: ​3.23+  * Latest version: ​4.0.0beta2
   * Added: October, 2010   * Added: October, 2010
-  * Updated: ​September2017 +  * Updated: ​July2019 
-  * Link: http://mummer.sourceforge.net/+  * Link: https://github.com/mummer4/​mummer
  
 ===== Usage ===== ===== Usage =====
  
-See versions ​of MUMmer ​which are available:+See versions which are available:
 <​code>​$ module avail MUMmer</​code>​ <​code>​$ module avail MUMmer</​code>​
  
-Load one version into your environment:​ +Load one version into your environment ​and run it
-<​code>​$ module load MUMmer/3.23</​code>​+<​code>​$ module load MUMmer/4.0.0beta2 
 +$ mummer</​code>​
  
 ===== Installation ====== ===== Installation ======
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 <​code>​$ cd /tmp <​code>​$ cd /tmp
-$ wget 'https://downloads.sourceforge.net/project/mummer/mummer/3.23/MUMmer3.23.tar.gz?​r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fmummer%2F&​ts=1505571212&​use_mirror=netix' ​-O MUMmer3.23.tar.gz +$ wget https://github.com/mummer4/mummer/releases/download/v4.0.0beta2/​mummer-4.0.0beta2.tar.gz 
-$ tar xf MUMmer3.23.tar.gz +$ tar xf mummer-4.0.0beta2.tar.gz 
-# the make process hard-codes some perl paths, so copy the source to the place where you want the software installed before compiling +$ cd mummer-4.0.0beta2 
-sudo mv MUMmer3.23 /​export/​apps/​MUMmer/​3.23 +$ ./configure --prefix=/​export/​apps/​MUMmer/​4.0.0beta2 
-cd /​export/​apps/​MUMmer/​3.23 +make 
-$ scl enable devtoolset-4 bash +$ sudo install -d -o aorth /​export/​apps/​MUMmer/​4.0.0beta2 
-$ make CPPFLAGS="​-O3 -DSIXTYFOURBITS"​ +$ make install 
-$ sudo chown -R root:root /​export/​apps/​MUMmer/​3.23</​code>​+$ sudo chown -R root:root /​export/​apps/​MUMmer/​4.0.0beta2</​code>​
mummer-software.txt · Last modified: 2019/07/09 17:01 by aorth