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mummer-software [2017/09/19 12:45]
aorth
mummer-software [2019/07/09 14:01]
aorth
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 ====== MUMmer ====== ====== MUMmer ======
-MUMmer is a versatil alignment tool for DNA and protein sequences.+MUMmer is a versatile alignment tool for DNA and protein sequences.
  
 ===== Information ===== ===== Information =====
  
-  * Latest version: 3.23+  * Latest version: 4.0.0beta2
   * Added: October, 2010   * Added: October, 2010
-  * Updated: September2017 +  * Updated: July2019 
-  * Link: http://mummer.sourceforge.net/+  * Link: https://github.com/mummer4/mummer
  
 ===== Usage ===== ===== Usage =====
  
-See versions of MUMmer which are available:+See versions which are available:
 <code>$ module avail MUMmer</code> <code>$ module avail MUMmer</code>
  
-Load one version into your environment: +Load one version into your environment and run it
-<code>$ module load MUMmer/3.23</code>+<code>$ module load MUMmer/4.0.0beta2 
 +$ mummer</code>
  
 ===== Installation ====== ===== Installation ======
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 <code>$ cd /tmp <code>$ cd /tmp
-$ wget 'https://downloads.sourceforge.net/project/mummer/mummer/3.23/MUMmer3.23.tar.gz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fmummer%2F&ts=1505571212&use_mirror=netix' -O MUMmer3.23.tar.gz +$ wget https://github.com/mummer4/mummer/releases/download/v4.0.0beta2/mummer-4.0.0beta2.tar.gz 
-$ tar xf MUMmer3.23.tar.gz +$ tar xf mummer-4.0.0beta2.tar.gz 
-# the make process hard-codes some perl paths, so copy the source to the place where you want the software installed before compiling +$ cd mummer-4.0.0beta2 
-sudo mv MUMmer3.23 /export/apps/MUMmer/3.23 +$ ./configure --prefix=/export/apps/MUMmer/4.0.0beta2 
-cd /export/apps/MUMmer/3.23 +make 
-$ scl enable devtoolset-4 bash +$ sudo install -d -o aorth /export/apps/MUMmer/4.0.0beta2 
-$ make CPPFLAGS="-O3 -DSIXTYFOURBITS" +$ make install 
-$ sudo chown -R root:root /export/apps/MUMmer/3.23</code>+$ sudo chown -R root:root /export/apps/MUMmer/4.0.0beta2</code>
mummer-software.txt · Last modified: 2019/07/09 14:01 by aorth