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mummer-software

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MUMmer

MUMmer is a versatil alignment tool for DNA and protein sequences.

Information

Usage

See versions of MUMmer which are available:

$ module avail MUMmer

Load one version into your environment:

$ module load MUMmer/3.23

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget 'https://downloads.sourceforge.net/project/mummer/mummer/3.23/MUMmer3.23.tar.gz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fmummer%2F&ts=1505571212&use_mirror=netix' -O MUMmer3.23.tar.gz
$ tar xf MUMmer3.23.tar.gz
# the make process hard-codes some perl paths, so copy the source to the place where you want the software installed before compiling
$ sudo mv MUMmer3.23 /export/apps/MUMmer/3.23
$ cd /export/apps/MUMmer/3.23
$ scl enable devtoolset-4 bash
$ make CPPFLAGS="-O3 -DSIXTYFOURBITS"
$ sudo chown -R root:root /export/apps/MUMmer/3.23
mummer-software.txt · Last modified: 2017/09/19 12:45 by aorth