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multiqc-software

MultiQC

MultiQC is a reporting tool that parses summary statistics from results and log files generated by other bioinformatics tools. MultiQC doesn't run other tools for you - it's designed to be placed at the end of analysis pipelines or to be run manually when you've finished running your tools.

Information

Usage

See which versions of multiqc are available:

$ module avail multiqc

Load one version of multiqc into your environment and run it:

$ module load multiqc/1.4
$ multiqc

Installation

Notes from the sysadmin during installation:

$ module load python/3.6.2
$ sudo mkdir -p /export/apps/multiqc/1.4
$ sudo chown aorth /export/apps/multiqc/1.4
$ python -m venv /export/apps/multiqc/1.4
$ . /export/apps/multiqc/1.4/bin/activate
$ pip install multiqc
$ sudo chown -R root:root /export/apps/multiqc
multiqc-software.txt · Last modified: 2018/02/05 17:52 by aorth