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mothur-software

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mothur

mothur offers the ability to go from raw sequences to the generation of visualization tools to describe α and β diversity.

Information

Usage

See versions of mothur which are available:

$ module avail mothur

Load and run mothur:

$ module load mothur/1.39.1
$ mothur

Installation

Notes from the sysadmin during installation:

- install mothur/1.39.1
$ cd /tmp
$ wget -qO- https://github.com/mothur/mothur/archive/v1.39.1.tar.gz | tar xvz
$ cd mothur-1.39.1/
$ sudo mkdir -p /export/apps/mothur/1.39.1/
$ sudo chown -R joguya:joguya /export/apps/mothur/1.39.1/
$ scl enable devtoolset-3 bash
$ sed -i 's#^BOOST_LIBRARY_DIR=.*$#BOOST_LIBRARY_DIR=/export/apps/boost/1.50.0/lib#g;s#^BOOST_INCLUDE_DIR=.*$#BOOST_INCLUDE_DIR=/export/apps/boost/1.50.0/include#g' Makefile
$ make -j4
$ sudo chown -R root:root /export/apps/mothur/1.39.1/
mothur-software.txt · Last modified: 2017/02/08 09:46 by joguya