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mothur-krona-software

mothur_krona

A script to convert mothur taxonomy summary files to Krona XML format.

Information

Usage

See which versions of mothur_krona are available:

$ module avail mothur_krona

Load mothur_krona

$ module load mothur_krona/git-87499a0

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/accaldwell/mothur_krona.git
$ cd mothur_krona/
$ sudo mkdir -p /export/apps/mothur_krona/git-87499a0
$ sudo cp LICENSE.txt mothur_krona_XML.py README.md /export/apps/mothur_krona/git-87499a0/

- install python lxml module—it is required by mothur_krona

$ cd /tmp
$ wget https://github.com/lxml/lxml/archive/lxml-3.6.1.tar.gz
$ tar -xvf lxml-3.6.1.tar.gz
$ module load python/2.7.8
$ chown -R joguya:joguya /export/apps/python/2.7.8
$ python setup.py build
$ python setup.py install
$ chown -R root:root /export/apps/python/2.7.8
mothur-krona-software.txt · Last modified: 2016/08/16 09:50 by joguya