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Selecting a specific region in a vcf file

In order to obtain a subset of the vcf file based on genome region please use the following command. Original documentation here

module load tabix

bgzip Genotypes2015.annotated.vcf

tabix -p vcf /home/emasumba/Genotypes2015.annotated.vcf.gz

tabix -p vcf /home/emasumba/Genotypes2015.annotated.vcf.gz Chromosome11:5532312-5532957

mkatari-bioinformatics-august-2013-vcfregion.1432215744.txt.gz · Last modified: 2015/05/21 13:42 by mkatari