User Tools
mkatari-bioinformatics-august-2013-igvnotes
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision | |||
|
mkatari-bioinformatics-august-2013-igvnotes [2014/05/21 12:57] mkatari |
mkatari-bioinformatics-august-2013-igvnotes [2014/05/21 13:45] (current) mkatari |
||
|---|---|---|---|
| Line 17: | Line 17: | ||
| 3) For each sam files, convert to bam file | 3) For each sam files, convert to bam file | ||
| < | < | ||
| - | samtools view -S -b / | + | samtools view -S -b NDL06-132.sam > NDL06-132.bam |
| </ | </ | ||
| Line 27: | Line 27: | ||
| 5) create index for each bam file | 5) create index for each bam file | ||
| < | < | ||
| - | / | + | samtools index NDL06-132.bam.sorted.bam |
| </ | </ | ||
mkatari-bioinformatics-august-2013-igvnotes.1400677025.txt.gz · Last modified: 2014/05/21 12:57 by mkatari
Page Tools
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Noncommercial-Share Alike 4.0 International
