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mkatari-bioinformatics-august-2013-gatknotes [2016/08/17 11:34]
mkatari
mkatari-bioinformatics-august-2013-gatknotes [2016/08/17 11:37] (current)
mkatari
Line 278: Line 278:
     --variant PTC_human.gatk.vcf \     --variant PTC_human.gatk.vcf \
     --filterExpression "​QD<​2.0||MQ<​40.0||FS>​60.0||HaplotypeScore>​13.0"​ \     --filterExpression "​QD<​2.0||MQ<​40.0||FS>​60.0||HaplotypeScore>​13.0"​ \
-    --filterName ​"mannyfilter"+    --filterName mannyfilter
  
 </​code>​ </​code>​
mkatari-bioinformatics-august-2013-gatknotes.txt · Last modified: 2016/08/17 11:37 by mkatari