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mkatari-bioinformatics-august-2013-blastnotes [2015/06/04 15:36]
mkatari
mkatari-bioinformatics-august-2013-blastnotes [2015/06/04 15:38]
mkatari
Line 77: Line 77:
  
 module load blast module load blast
 +
 +echo "Blast ready to run"
  
 blastn -db cassavaV5 -query scaffold12498.fa \ blastn -db cassavaV5 -query scaffold12498.fa \
        -out scaffold12498.cassavaV5_2.bout \        -out scaffold12498.cassavaV5_2.bout \
        ​--num_threads 8 -outfmt 6 -evalue 0.00001        ​--num_threads 8 -outfmt 6 -evalue 0.00001
 +
 +echo "Blast complete"​
  
 </​code>​ </​code>​
mkatari-bioinformatics-august-2013-blastnotes.txt · Last modified: 2015/06/04 15:38 by mkatari