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mkatari-bioinformatics-august-2013-bioinformatics-august-2013-mpileup [2015/11/18 22:28]
mkatari
mkatari-bioinformatics-august-2013-bioinformatics-august-2013-mpileup [2015/11/18 22:48] (current)
mkatari
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 bowtie2 -x PTC_Human -U Cohen.fastq -S Cohen.sam bowtie2 -x PTC_Human -U Cohen.fastq -S Cohen.sam
 samtools view -bS Cohen.sam > Cohen.bam samtools view -bS Cohen.sam > Cohen.bam
-samtools sort +samtools sort Cohen.bam Cohen_sorted 
 +samtools index Cohen_sorted.bam
 </​code>​ </​code>​
  
mkatari-bioinformatics-august-2013-bioinformatics-august-2013-mpileup.txt · Last modified: 2015/11/18 22:48 by mkatari