User Tools

Site Tools


mira-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
mira-software [2014/12/16 12:20]
joguya [v4.0.2]
mira-software [2015/03/23 23:25] (current)
aorth
Line 1: Line 1:
-====== ​mira ======+====== ​Mira ======
 MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data.
  
-==== v4.0.2 ==== 
   * Version: 4.0.2   * Version: 4.0.2
   * Added: December, 2014   * Added: December, 2014
Line 10: Line 9:
   * Show all available versions of mira<​code>​module avail mira</​code>​   * Show all available versions of mira<​code>​module avail mira</​code>​
   * Load mira module: <​code>​module load mira/​4.0.2</​code>​   * Load mira module: <​code>​module load mira/​4.0.2</​code>​
-  * get quick help:<​code>​mira --help</​code>​ +  * Get quick help:<​code>​mira --help</​code>​
  
 === Installation === === Installation ===
-  * mira is already compiled, just download the tarball & copy content to /​export/​apps<​code>​wget "​http://​sourceforge.net/​projects/​mira-assembler/​files/​MIRA/​stable/​mira_4.0.2_linux-gnu_x86_64_static.tar.bz2/​download"​ -O mira_4.0.2_linux-gnu_x86_64_static.tar.bz2+  * mira is already compiled, just download the tarball & copy content to /​export/​apps 
 +  * <​code>​wget "​http://​sourceforge.net/​projects/​mira-assembler/​files/​MIRA/​stable/​mira_4.0.2_linux-gnu_x86_64_static.tar.bz2/​download"​ -O mira_4.0.2_linux-gnu_x86_64_static.tar.bz2
 sudo mkdir -p /​export/​apps/​mira/​4.0.2 sudo mkdir -p /​export/​apps/​mira/​4.0.2
 sudo cp -r /​home/​joguya/​src/​mira_4.0.2_linux-gnu_x86_64_static/​* /​export/​apps/​mira/​4.0.2/</​code>​ sudo cp -r /​home/​joguya/​src/​mira_4.0.2_linux-gnu_x86_64_static/​* /​export/​apps/​mira/​4.0.2/</​code>​
-  * mira module file<​code>​ 
-#%Module1.0 
-#####################################################################​ 
-## 
-## mira Modulefile 
-## By James Oguya, j.oguya@cgiar.org 
-## December, 2014 
-## 
- 
-set appname ​        mira 
-set version ​        4.0.2 
-set prefix ​         /​export/​apps/​${appname}/​${version} 
-set exec_prefix ​    ​${prefix} 
-set url "​http://​sourceforge.net/​apps/​mediawiki/​mira-assembler/​index.php?​title=Main_Page"​ 
-set msg "MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data.\nMIRA Official Site: $url\n"​ 
- 
-module-whatis $msg 
- 
-proc ModulesHelp { } { 
-    puts stderr "​$msg"​ 
-} 
- 
-conflict ​       mira 
- 
-prepend-path ​   PATH    ${exec_prefix}/​bin 
- 
-# mira depends on repeatmasker,​ load the repeatmasker module as well 
-if { ![is-loaded staden] } { 
-    module load staden 
-} 
-</​code>​ 
- 
-  * deploy the new module using ansible<​code>​ansible-playbook site.yml -u provisioning -K -s --limit=compute --tags=module</​code>​ 
- 
mira-software.txt · Last modified: 2015/03/23 23:25 by aorth