MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data.

• Version: 4.0.2
• Added: December, 2014
• Link: http://sourceforge.net/projects/mira-assembler/?source=directory

• Show all available versions of mira

  module avail mira

• Load mira module:

  module load mira/4.0.2

• get quick help:

  mira --help

• mira is already compiled, just download the tarball & copy content to /export/apps

  wget "http://sourceforge.net/projects/mira-assembler/files/MIRA/stable/mira_4.0.2_linux-gnu_x86_64_static.tar.bz2/download" -O mira_4.0.2_linux-gnu_x86_64_static.tar.bz2
  sudo mkdir -p /export/apps/mira/4.0.2
  sudo cp -r /home/joguya/src/mira_4.0.2_linux-gnu_x86_64_static/* /export/apps/mira/4.0.2/

• mira module file

  #%Module1.0
  #####################################################################
  ##
  ## mira Modulefile
  ## By James Oguya, j.oguya@cgiar.org
  ## December, 2014
  ##
  
  set appname         mira
  set version         4.0.2
  set prefix          /export/apps/${appname}/${version}
  set exec_prefix     ${prefix}
  set url "http://sourceforge.net/apps/mediawiki/mira-assembler/index.php?title=Main_Page"
  set msg "MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data.\nMIRA Official Site: $url\n"
  
  module-whatis $msg
  
  proc ModulesHelp { } {
      puts stderr "$msg"
  }
  
  conflict        mira
  
  prepend-path    PATH    ${exec_prefix}/bin
  
  # mira depends on repeatmasker, load the repeatmasker module as well
  if { ![is-loaded staden] } {
      module load staden
  }

• deploy the new module using ansible

  ansible-playbook site.yml -u provisioning -K -s --limit=compute --tags=module