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minpath-software [2017/07/24 10:52] (current)
aorth created
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 +====== MinPath ======
 +MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions,​ achieving a more conservative,​ yet more faithful, estimation of the biological pathways for a query dataset.
 +
 +===== Information =====
 +
 +  * Latest version: 1.2
 +  * Added: July, 2017
 +  * Link: http://​omics.informatics.indiana.edu/​MinPath/​
 +
 +===== Usage =====
 +
 +See versions of MinPath which are available:
 +<​code>​$ module avail MinPath</​code>​
 +
 +Load MinPath into your environment and run it:
 +<​code>​$ module load MinPath/1.2
 +$ MinPath1.2.py</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ wget '​http://​omics.informatics.indiana.edu/​mg/​get.php?​justdoit=yes&​software=minpath1.2.tar.gz'​ -O minpath1.2.tar.gz
 +$ tar xf minpath1.2.tar.gz
 +$ cd MinPath
 +$ find . -type f -exec chmod 644 {} \;
 +$ find . -type d -exec chmod 755 {} \;
 +$ find . -type f -iname "​*.py"​ -exec chmod 755 {} \;
 +$ sudo mkdir -p /​export/​apps/​MinPath/​1.2
 +$ sudo cp -r * /​export/​apps/​MinPath/​1.2</​code>​
  
minpath-software.txt · Last modified: 2017/07/24 10:52 by aorth