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minpath-software

MinPath

MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achieving a more conservative, yet more faithful, estimation of the biological pathways for a query dataset.

Information

Usage

See versions of MinPath which are available:

$ module avail MinPath

Load MinPath into your environment and run it:

$ module load MinPath/1.2
$ MinPath1.2.py

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget 'http://omics.informatics.indiana.edu/mg/get.php?justdoit=yes&software=minpath1.2.tar.gz' -O minpath1.2.tar.gz
$ tar xf minpath1.2.tar.gz
$ cd MinPath
$ find . -type f -exec chmod 644 {} \;
$ find . -type d -exec chmod 755 {} \;
$ find . -type f -iname "*.py" -exec chmod 755 {} \;
$ sudo mkdir -p /export/apps/MinPath/1.2
$ sudo cp -r * /export/apps/MinPath/1.2
minpath-software.txt · Last modified: 2017/07/24 10:52 by aorth