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miniasm-software

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miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step).

Information

Usage

See versions of miniasm that are available:

$ module avail miniasm

Load one version into your environment and run it:

$ module load miniasm/0.3
$ miniasm

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/lh3/miniasm/archive/v0.3.tar.gz
$ tar xf v0.3.tar.gz
$ cd miniasm-0.3
$ make
$ sudo mkdir -p /export/apps/miniasm/0.3/bin
$ sudo cp LICENSE.txt /export/apps/miniasm/0.3
$ sudo cp -r misc /export/apps/miniasm/0.3
$ sudo cp miniasm minidot /export/apps/miniasm/0.3/bin
$ sudo mkdir -p /export/apps/miniasm/0.3/share/man/man1
$ sudo cp miniasm.1 /export/apps/miniasm/0.3/share/man/man1
miniasm-software.1541864533.txt.gz · Last modified: 2018/11/10 18:42 by aorth