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metaphlan2-software [2019/12/11 11:43]
aorth created
metaphlan2-software [2019/12/22 08:16] (current)
aorth
Line 39: Line 39:
 $ pip3 install -U pip setuptools $ pip3 install -U pip setuptools
 $ pip3 install -U numpy scipy pandas biopython matplotlib $ pip3 install -U numpy scipy pandas biopython matplotlib
-$ sudo cp -r . /export/apps/metaphlan2/2.9.5</code>+$ sudo cp -r . /export/apps/metaphlan2/2.9.5 
 +$ sudo mkdir /export/apps/metaphlan2/2.9.5/metaphlan_databases 
 +$ wget https://bitbucket.org/biobakery/metaphlan2/downloads/mpa_v295_CHOCOPhlAn_201901.tar 
 +$ sudo mv mpa_v295_CHOCOPhlAn_201901.tar /export/apps/metaphlan2/2.9.5/metaphlan_databases</code> 
 + 
 +**Note:** check the ''mpa_latest'' file on [[https://bitbucket.org/biobakery/metaphlan2/downloads/|metaphlan2's downloads page]] to see which is the latest database during installation.
metaphlan2-software.1576064584.txt.gz · Last modified: 2019/12/11 11:43 by aorth