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metaphlan2-software [2019/12/11 11:43]
aorth created
metaphlan2-software [2019/12/22 08:16] (current)
aorth
Line 39: Line 39:
 $ pip3 install -U pip setuptools $ pip3 install -U pip setuptools
 $ pip3 install -U numpy scipy pandas biopython matplotlib $ pip3 install -U numpy scipy pandas biopython matplotlib
-$ sudo cp -r . /​export/​apps/​metaphlan2/​2.9.5</​code>​+$ sudo cp -r . /​export/​apps/​metaphlan2/​2.9.5 
 +$ sudo mkdir /​export/​apps/​metaphlan2/​2.9.5/​metaphlan_databases 
 +$ wget https://​bitbucket.org/​biobakery/​metaphlan2/​downloads/​mpa_v295_CHOCOPhlAn_201901.tar 
 +$ sudo mv mpa_v295_CHOCOPhlAn_201901.tar /​export/​apps/​metaphlan2/​2.9.5/​metaphlan_databases</​code>​ 
 + 
 +**Note:** check the ''​mpa_latest''​ file on [[https://​bitbucket.org/​biobakery/​metaphlan2/​downloads/​|metaphlan2'​s downloads page]] to see which is the latest database during installation.
metaphlan2-software.txt · Last modified: 2019/12/22 08:16 by aorth