User Tools

Site Tools


metabat-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

metabat-software [2017/09/25 13:23] (current)
aorth created
Line 1: Line 1:
 +====== MetaBAT ======
 +MetaBAT is an efficient tool for accurately reconstructing single genomes from complex microbial communities.
  
 +===== Information =====
 +
 +  * Version: 2.12.1
 +  * Added: September, 2017
 +  * Link: https://​bitbucket.org/​berkeleylab/​metabat
 +
 +===== Usage =====
 +
 +See versions of metabat which are available:
 +<​code>​$ module avail megahit</​code>​
 +
 +Load one version into your environment and run it:
 +<​code>​$ module load metabat/​2.12.1
 +$ runMetaBat.sh</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ wget https://​bitbucket.org/​berkeleylab/​metabat/​downloads/​metabat-static-binary-linux-x64_v2.12.1.tar.gz
 +$ tar xf metabat-static-binary-linux-x64_v2.12.1.tar.gz
 +$ sudo mkdir -p /​export/​apps/​metabat
 +$ sudo cp -r metabat /​export/​apps/​metabat/​2.12.1
 +$ sudo find /​export/​apps/​metabat/​2.12.1 -type d -exec chmod 755 {} \;
 +$ sudo chmod 755 /​export/​apps/​metabat/​2.12.1/​*
 +$ sudo chmod 644 /​export/​apps/​metabat/​2.12.1/​*.{md,​txt}</​code>​
metabat-software.txt · Last modified: 2017/09/25 13:23 by aorth