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metabat-software

MetaBAT

MetaBAT is an efficient tool for accurately reconstructing single genomes from complex microbial communities.

Information

Usage

See versions of metabat which are available:

$ module avail megahit

Load one version into your environment and run it:

$ module load metabat/2.12.1
$ runMetaBat.sh

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://bitbucket.org/berkeleylab/metabat/downloads/metabat-static-binary-linux-x64_v2.12.1.tar.gz
$ tar xf metabat-static-binary-linux-x64_v2.12.1.tar.gz
$ sudo mkdir -p /export/apps/metabat
$ sudo cp -r metabat /export/apps/metabat/2.12.1
$ sudo find /export/apps/metabat/2.12.1 -type d -exec chmod 755 {} \;
$ sudo chmod 755 /export/apps/metabat/2.12.1/*
$ sudo chmod 644 /export/apps/metabat/2.12.1/*.{md,txt}
metabat-software.txt · Last modified: 2017/09/25 13:23 by aorth