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megahit-software [2017/07/06 17:34] (current)
aorth created
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 +====== MEGAHIT ======
 +single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly.
  
 +===== Information =====
 +
 +  * Version: git-02102e1b
 +  * Added: July, 2017
 +  * Link: https://​github.com/​voutcn/​megahit
 +
 +===== Usage =====
 +
 +See versions of megahit which are available:
 +<​code>​$ module avail megahit</​code>​
 +
 +After loading the module, consult the built-in help:
 +<​code>​$ megahit -h</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ git clone https://​github.com/​voutcn/​megahit.git
 +$ cd megahit
 +$ scl enable devtoolset-4 bash
 +$ make
 +$ sudo mkdir -p /​export/​apps/​megahit/​git-02102e1b/​bin
 +$ sudo cp megahit megahit_asm_core megahit_sdbg_build megahit_toolkit /​export/​apps/​megahit/​git-02102e1b/​bin</​code>​
megahit-software.txt · Last modified: 2017/07/06 17:34 by aorth