single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly.

• Version: git-02102e1b
• Added: July, 2017
• Link: https://github.com/voutcn/megahit

See versions of megahit which are available:

$ module avail megahit

After loading the module, consult the built-in help:

$ megahit -h

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/voutcn/megahit.git
$ cd megahit
$ scl enable devtoolset-4 bash
$ make
$ sudo mkdir -p /export/apps/megahit/git-02102e1b/bin
$ sudo cp megahit megahit_asm_core megahit_sdbg_build megahit_toolkit /export/apps/megahit/git-02102e1b/bin