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single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly.
See versions of megahit which are available:
$ module avail megahit
After loading the module, consult the built-in help:
$ megahit -h
Notes from the sysadmin during installation:
$ cd /tmp $ git clone https://github.com/voutcn/megahit.git $ cd megahit $ scl enable devtoolset-4 bash $ make $ sudo mkdir -p /export/apps/megahit/git-02102e1b/bin $ sudo cp megahit megahit_asm_core megahit_sdbg_build megahit_toolkit /export/apps/megahit/git-02102e1b/bin