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megahit-software

MEGAHIT

single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly.

Information

Usage

See versions of megahit which are available:

$ module avail megahit

After loading the module, consult the built-in help:

$ megahit -h

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/voutcn/megahit.git
$ cd megahit
$ scl enable devtoolset-4 bash
$ make
$ sudo mkdir -p /export/apps/megahit/git-02102e1b/bin
$ sudo cp megahit megahit_asm_core megahit_sdbg_build megahit_toolkit /export/apps/megahit/git-02102e1b/bin
megahit-software.txt · Last modified: 2017/07/06 17:34 by aorth