single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly.
See versions of megahit which are available:
$ module avail megahit
Load one version into your environment and run it:
$ module load megahit/1.1.4 $ megahit -h
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://github.com/voutcn/megahit/releases/download/v1.1.4/megahit_v1.1.4_LINUX_CPUONLY_x86_64-bin.tar.gz $ tar xf megahit_v1.1.4_LINUX_CPUONLY_x86_64-bin.tar.gz $ sudo mkdir -p /export/apps/megahit/1.1.4/bin $ sudo cp megahit_v1.1.4_LINUX_CPUONLY_x86_64-bin/megahit* /export/apps/megahit/1.1.4/bin