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mecat-software

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MECAT

An ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads.

Information

Usage

See versions of MECAT which are available:

$ module avail MECAT

Load one version into your environment and run it:

$ module load MECAT/git-d04bfa84
$ mecat2pw
$ mecat2canu

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/xiaochuanle/MECAT.git
$ cd MECAT
$ make
$ sudo mkdir -p /export/apps/MECAT/git-d04bfa84
$ sudo cp -r Linux-amd64 /export/apps/MECAT/git-d04bfa84
mecat-software.txt · Last modified: 2018/11/10 19:12 by aorth