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maxbin2-software [2020/03/15 13:10]
aorth
maxbin2-software [2020/03/15 13:42] (current)
aorth
Line 30: Line 30:
 $ scl enable devtoolset-7 bash $ scl enable devtoolset-7 bash
 $ make $ make
-$ sed -i '​s/​idba_ud/​idba_hybrid/' ​run_MaxBin.pl+$ sed run_MaxBin.pl ​-i 
 +  -e '​s/​idba_ud/​idba_hybrid/' ​
 +  -e '​s_IDBA\\-UD_IDBA\\-Hybrid_'​
 $ rm src/*.o $ rm src/*.o
 $ sudo cp -r *.hmm *.pl *.r src /​export/​apps/​maxbin2/​2.2.7 $ sudo cp -r *.hmm *.pl *.r src /​export/​apps/​maxbin2/​2.2.7
Line 36: Line 38:
 </​code>​ </​code>​
  
-Note: according to the readme MaxBin2 needs IDBA-UD v1.1.1, but this version was published at least six years ago, after which time the binary was renamed to ''​idba_hybrid''​. Old tarballs are not available so I will try to see if pointing ​''​run_MaxBin.pl''​ to the hybrid version workds...+Note: according to the readme MaxBin2 needs IDBA-UD v1.1.1, but this version was published at least six years ago, after which time the binary was renamed to ''​idba_hybrid''​. Old tarballs are not available so I will try to see if patching ​''​run_MaxBin.pl''​ to use the new ''​idba_hybrid''​ binary works...
maxbin2-software.txt · Last modified: 2020/03/15 13:42 by aorth