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maxbin2-software [2020/03/15 10:10]
aorth
maxbin2-software [2020/03/15 10:42] (current)
aorth
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 $ scl enable devtoolset-7 bash $ scl enable devtoolset-7 bash
 $ make $ make
-$ sed -i 's/idba_ud/idba_hybrid/' run_MaxBin.pl+$ sed run_MaxBin.pl -i 
 +  -e 's/idba_ud/idba_hybrid/' 
 +  -e 's_IDBA\\-UD_IDBA\\-Hybrid_'
 $ rm src/*.o $ rm src/*.o
 $ sudo cp -r *.hmm *.pl *.r src /export/apps/maxbin2/2.2.7 $ sudo cp -r *.hmm *.pl *.r src /export/apps/maxbin2/2.2.7
Line 36: Line 38:
 </code> </code>
  
-Note: according to the readme MaxBin2 needs IDBA-UD v1.1.1, but this version was published at least six years ago, after which time the binary was renamed to ''idba_hybrid''. Old tarballs are not available so I will try to see if pointing ''run_MaxBin.pl'' to the hybrid version workds...+Note: according to the readme MaxBin2 needs IDBA-UD v1.1.1, but this version was published at least six years ago, after which time the binary was renamed to ''idba_hybrid''. Old tarballs are not available so I will try to see if patching ''run_MaxBin.pl'' to use the new ''idba_hybrid'' binary works...
maxbin2-software.1584267051.txt.gz · Last modified: 2020/03/15 10:10 by aorth