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maxbin2-software [2020/03/15 09:59]
aorth
maxbin2-software [2020/03/15 10:42] (current)
aorth
Line 30: Line 30:
 $ scl enable devtoolset-7 bash $ scl enable devtoolset-7 bash
 $ make $ make
 +$ sed run_MaxBin.pl -i \
 +  -e 's/idba_ud/idba_hybrid/' \
 +  -e 's_IDBA\\-UD_IDBA\\-Hybrid_'
 $ rm src/*.o $ rm src/*.o
 $ sudo cp -r *.hmm *.pl *.r src /export/apps/maxbin2/2.2.7 $ sudo cp -r *.hmm *.pl *.r src /export/apps/maxbin2/2.2.7
 $ sudo chown -R root:root /export/apps/maxbin2/2.2.7 $ sudo chown -R root:root /export/apps/maxbin2/2.2.7
 </code> </code>
 +
 +Note: according to the readme MaxBin2 needs IDBA-UD v1.1.1, but this version was published at least six years ago, after which time the binary was renamed to ''idba_hybrid''. Old tarballs are not available so I will try to see if patching ''run_MaxBin.pl'' to use the new ''idba_hybrid'' binary works...
maxbin2-software.1584266346.txt.gz · Last modified: 2020/03/15 09:59 by aorth