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The MaSuRCA (Maryland Super Read Cabog Assembler) assembler combines the benefits of deBruijn graph and Overlap-Layout-Consensus assembly approaches. Since version 3.2.1 it supports hybrid assembly with short Illumina reads and long high error PacBio/MinION data.
See versions of masurca which are available:
$ module avail masurca
Load one version into your environment and run it:
$ module load masurca/3.2.8 $ masurca
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://github.com/alekseyzimin/masurca/releases/download/3.2.8/MaSuRCA-3.2.8.tar.gz $ tar xf MaSuRCA-3.2.8.tar.gz $ sudo mkdir /export/apps/masurca/3.2.8 $ sudo chown aorth /export/apps/masurca/3.2.8 $ sudo yum install perl-Env.noarch $ DEST=/export/apps/masurca/3.2.8 ./install.sh $ sudo chown -R root:root /export/apps/masurca/3.2.8