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The MaSuRCA (Maryland Super Read Cabog Assembler) assembler combines the benefits of deBruijn graph and Overlap-Layout-Consensus assembly approaches. Since version 3.2.1 it supports hybrid assembly with short Illumina reads and long high error PacBio/MinION data.



See versions of masurca which are available

module avail masurca


Notes from the sysadmin during installation:

$ cd /tmp
$ wget '' -O MaSuRCA-2.3.2.tar.gz
$ tar xf MaSuRCA-2.3.2.tar.gz 
$ cd MaSuRCA-2.3.2
$ mkdir -p /export/apps/masurca/2.3.2
$ sudo chown aorth /export/apps/masurca/2.3.2
$ scl enable devtoolset-2 bash
$ DEST=/export/apps/masurca/2.3.2 ./
$ sudo chown -R root:root /export/apps/masurca/2.3.2

Get a download link for the tarball from:

masurca-software.1541859833.txt.gz · Last modified: 2018/11/10 17:23 by aorth