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MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454).



See versions of masurca which are available

module avail masurca


Notes from the sysadmin during installation:

$ cd /tmp
$ wget '' -O MaSuRCA-2.3.2.tar.gz
$ tar xf MaSuRCA-2.3.2.tar.gz 
$ cd MaSuRCA-2.3.2
$ mkdir -p /export/apps/masurca/2.3.2
$ sudo chown aorth /export/apps/masurca/2.3.2
$ scl enable devtoolset-2 bash
$ DEST=/export/apps/masurca/2.3.2 ./
$ sudo chown -R root:root /export/apps/masurca/2.3.2

Get a download link for the tarball from:

masurca-software.1414924214.txt.gz · Last modified: 2014/11/02 13:30 by aorth