User Tools

Site Tools


masurca-software

This is an old revision of the document!


MaSuRCA

MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454).

Information

Usage

See versions of masurca which are available

module avail masurca

Installation

Notes from the sysadmin during installation:

wget 'http://www.genome.umd.edu/download_masurca.php?a=YS5vcnRoQGNnaWFyLm9yZw&b=src&c=36046372&d=3b9bd77c404ec8a48b1fe42aac9a3eb6082f8e58' -O MaSuRCA-2.3.1.tar.gz
tar zxf MaSuRCA-2.3.1.tar.gz -C /tmp/
cd /tmp/MaSuRCA-2.3.1/
sudo mkdir -p /export/apps/masurca/2.3.1                                                                                                                                          
sudo chown aorth /export/apps/masurca/2.3.1
DEST=/export/apps/masurca/2.3.1 ./install.sh
sudo chown -R root:root /export/apps/masurca/2.3.1

Get a download link for the tarball from: http://www.genome.umd.edu/masurca_form.html

masurca-software.1412067936.txt.gz · Last modified: 2014/09/30 12:05 by aorth