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MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454).
module avail masurca
Notes from the sysadmin during installation:
wget 'http://www.genome.umd.edu/download_masurca.php?a=YS5vcnRoQGNnaWFyLm9yZw&b=src&c=36046372&d=3b9bd77c404ec8a48b1fe42aac9a3eb6082f8e58' -O MaSuRCA-2.3.1.tar.gz tar zxf MaSuRCA-2.3.1.tar.gz -C /tmp/ cd /tmp/MaSuRCA-2.3.1/ sudo mkdir -p /export/apps/masurca/2.3.1 sudo chown aorth /export/apps/masurca/2.3.1 DEST=/export/apps/masurca/2.3.1 ./install.sh sudo chown -R root:root /export/apps/masurca/2.3.1
Get a download link for the tarball from: http://www.genome.umd.edu/masurca_form.html