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MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454).
module avail masurca
Notes from the sysadmin during installation:
wget ftp://ftp.genome.umd.edu/pub/MaSuRCA/v2.2.1/MaSuRCA-2.2.1.tar.gz tar zxf MaSuRCA-2.2.1.tar.gz -C /tmp/ cd /tmp/MaSuRCA-2.2.1/ sudo mkdir -p /export/apps/masurca/2.2.1 sudo chown aorth /export/apps/masurca/2.2.1 scl enable devtoolset-1.1 bash DEST=/export/apps/masurca/2.2.1 ./install.sh sudo chown -R root:root /export/apps/masurca/2.2.1