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masurca-software [2018/11/10 14:23]
aorth
masurca-software [2019/04/01 15:27]
aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 2.3.2+  * Version: 3.3.1
   * Added: September, 2014   * Added: September, 2014
-  * Link: http://www.genome.umd.edu/masurca.html+  * Updated: April, 2019 
 +  * Link: https://github.com/alekseyzimin/masurca
  
 ===== Usage ===== ===== Usage =====
 +See versions of masurca which are available:
  
-=== See versions of masurca which are available === +<code>$ module avail masurca</code> 
-<code>module avail masurca</code>+ 
 +Load one version into your environment and run it: 
 +<code>module load masurca/3.3.1 
 +masurca</code>
  
 ===== Installation ====== ===== Installation ======
Line 17: Line 22:
  
 <code>$ cd /tmp <code>$ cd /tmp
-$ wget 'http://www.genome.umd.edu/download_masurca.php?a=YS5vcnRoQGNnaWFyLm9yZw&b=src&c=38900637&d=47784a9fd97c4cc396300a9c11cc9ab3096b11c3' -O MaSuRCA-2.3.2.tar.gz +$ wget https://github.com/alekseyzimin/masurca/releases/download/v3.3.1/MaSuRCA-3.3.1.tar.gz 
-$ tar xf MaSuRCA-2.3.2.tar.gz  +$ tar xf MaSuRCA-3.3.1.tar.gz 
-$ cd MaSuRCA-2.3.2 +$ cd MaSuRCA-3.3.1 
-$ mkdir -p /export/apps/masurca/2.3.2 +sudo mkdir /export/apps/masurca/3.3.1 
-$ sudo chown aorth /export/apps/masurca/2.3.2 +$ sudo chown aorth /export/apps/masurca/3.3.1 
-scl enable devtoolset-2 bash +sudo yum install perl-Env.noarch 
-$ DEST=/export/apps/masurca/2.3../install.sh +$ DEST=/export/apps/masurca/3.3../install.sh 
-$ sudo chown -R root:root /export/apps/masurca/2.3.2</code> +$ sudo chown -R root:root /export/apps/masurca/3.3.1</code>
- +
-Get a download link for the tarball from: http://www.genome.umd.edu/masurca_form.html+
masurca-software.txt · Last modified: 2019/04/01 15:27 by aorth