User Tools

Site Tools


masurca-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
Last revision Both sides next revision
masurca-software [2018/11/10 17:23]
aorth
masurca-software [2018/11/10 18:38]
aorth [Usage]
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Version: ​2.3.2+  * Version: 3.2.8
   * Added: September, 2014   * Added: September, 2014
-  * Link: http://www.genome.umd.edu/masurca.html+  ​* Updated: November, 2018 
 +  ​* Link: https://github.com/​alekseyzimin/masurca
  
 ===== Usage ===== ===== Usage =====
 +See versions of masurca which are available:
  
-=== See versions of masurca ​which are available === +<​code>​$ module avail masurca</​code>​ 
-<​code>​module ​avail masurca</​code>​+ 
 +Load one version into your environment and run it: 
 +<​code>​module ​load masurca/​3.2.8 
 +masurca</​code>​
  
 ===== Installation ====== ===== Installation ======
Line 17: Line 22:
  
 <​code>​$ cd /tmp <​code>​$ cd /tmp
-$ wget 'http://www.genome.umd.edu/download_masurca.php?​a=YS5vcnRoQGNnaWFyLm9yZw&​b=src&​c=38900637&​d=47784a9fd97c4cc396300a9c11cc9ab3096b11c3'​ -O MaSuRCA-2.3.2.tar.gz +$ wget https://github.com/​alekseyzimin/​masurca/​releases/​download/​3.2.8/​MaSuRCA-3.2.8.tar.gz 
-$ tar xf MaSuRCA-2.3.2.tar.gz  +$ tar xf MaSuRCA-3.2.8.tar.gz 
-cd MaSuRCA-2.3.2 +sudo mkdir /​export/​apps/​masurca/​3.2.8 
-mkdir -p /​export/​apps/​masurca/​2.3.2 +$ sudo chown aorth /​export/​apps/​masurca/​3.2.8 
-$ sudo chown aorth /​export/​apps/​masurca/​2.3.2 +sudo yum install perl-Env.noarch 
-scl enable devtoolset-2 bash +$ DEST=/​export/​apps/​masurca/​3.2.8 ./​install.sh 
-$ DEST=/​export/​apps/​masurca/​2.3.2 ./​install.sh +$ sudo chown -R root:root /​export/​apps/​masurca/​3.2.8</​code>​
-$ sudo chown -R root:root /​export/​apps/​masurca/​2.3.2</​code>​ +
- +
-Get a download link for the tarball from: http://​www.genome.umd.edu/​masurca_form.html+
masurca-software.txt · Last modified: 2019/04/01 18:27 by aorth