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masurca-software [2014/09/30 09:05]
masurca-software [2018/11/10 15:38]
aorth [Usage]
Line 1: Line 1:
 ====== MaSuRCA ====== ====== MaSuRCA ======
-MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454).+The MaSuRCA (Maryland Super Read Cabog Assembler) assembler combines the benefits of deBruijn graph and Overlap-Layout-Consensus assembly approaches. Since version 3.2.1 it supports hybrid assembly with short Illumina reads and long high error PacBio/MinION data.
 ===== Information ===== ===== Information =====
-  * Version: 2.3.1+  * Version: 3.2.8
   * Added: September, 2014   * Added: September, 2014
-  * Link:  * Updated: November, 2018 
 +  * Link:
 ===== Usage ===== ===== Usage =====
 +See versions of masurca which are available:
-=== See versions of masurca which are available === +<code>$ module avail masurca</code> 
-<code>module avail masurca</code>+ 
 +Load one version into your environment and run it: 
 +<code>module load masurca/3.2.8 
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
-<code>wget '' -O MaSuRCA-2.3.1.tar.gz +<code>$ cd /tmp 
-tar zxf MaSuRCA-2.3.1.tar.gz -C /tmp/ +wget 
-cd /tmp/MaSuRCA-2.3.1/ +tar xf MaSuRCA-3.2.8.tar.gz 
-sudo mkdir -p /export/apps/masurca/2.3.1                                                                                                                                           +sudo mkdir /export/apps/masurca/3.2.8 
-sudo chown aorth /export/apps/masurca/2.3.1 +sudo chown aorth /export/apps/masurca/3.2.
-DEST=/export/apps/masurca/2.3.1 ./ +$ sudo yum install perl-Env.noarch 
-sudo chown -R root:root /export/apps/masurca/2.3.1</code> +DEST=/export/apps/masurca/3.2../ 
- +sudo chown -R root:root /export/apps/masurca/3.2.8</code>
-Get a download link for the tarball from:
masurca-software.txt · Last modified: 2019/04/01 15:27 by aorth