User Tools

Site Tools


masurca-software

MaSuRCA

MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454).

Information

Usage

See versions of masurca which are available

module avail masurca

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget 'http://www.genome.umd.edu/download_masurca.php?a=YS5vcnRoQGNnaWFyLm9yZw&b=src&c=38900637&d=47784a9fd97c4cc396300a9c11cc9ab3096b11c3' -O MaSuRCA-2.3.2.tar.gz
$ tar xf MaSuRCA-2.3.2.tar.gz 
$ cd MaSuRCA-2.3.2
$ mkdir -p /export/apps/masurca/2.3.2
$ sudo chown aorth /export/apps/masurca/2.3.2
$ scl enable devtoolset-2 bash
$ DEST=/export/apps/masurca/2.3.2 ./install.sh
$ sudo chown -R root:root /export/apps/masurca/2.3.2

Get a download link for the tarball from: http://www.genome.umd.edu/masurca_form.html

masurca-software.txt · Last modified: 2014/11/02 13:30 by aorth