User Tools

Site Tools


mash-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

mash-software [2018/01/15 20:04] (current)
aorth created
Line 1: Line 1:
 +====== mash ======
 +Fast genome and metagenome distance estimation using MinHash.
  
 +  * Latest Version: 2.0
 +  * Added: January, 2018
 +  * Link: https://​github.com/​marbl/​Mash
 +
 +===== Usage =====
 +Show all available versions of mash:
 +
 +<​code>​$ module avail mash</​code>​
 +
 +Load a particular version of mash and run it:
 +
 +<​code>​$ module load mash/2.0
 +$ mash</​code>​
 +
 +===== Installation =====
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ wget https://​github.com/​marbl/​Mash/​releases/​download/​v2.0/​mash-Linux64-v2.0.tar
 +$ tar xf mash-Linux64-v2.0.tar
 +$ sudo mkdir -p /​export/​apps/​mash/​2.0/​bin
 +$ sudo cp mash-Linux64-v2.0/​mash /​export/​apps/​mash/​2.0/​bin</​code>​
mash-software.txt · Last modified: 2018/01/15 20:04 by aorth