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mapsplice-software [2016/03/24 16:49] (current)
joguya created
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 +====== MapSplice ======
  
 +MapSplice is a software for mapping RNA-seq data to reference genome for splice junction discovery that depends only on reference genome.
 +
 +===== Information =====
 +
 +  * Version: 2.2.0
 +  * Added: March, 2016
 +  * Link: http://​www.netlab.uky.edu/​p/​bioinfo/​MapSplice2
 +
 +===== Usage =====
 +
 +See which versions of mapsplice are available:
 +<​code>​$ module avail mapsplice
 +</​code>​
 +
 +Load mapsplice
 +<​code>​$ module load mapsplice/​2.2.0</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +
 +<​code>​
 +$ cd /tmp
 +$ wget http://​protocols.netlab.uky.edu/​~zeng/​MapSplice-v2.2.0.zip
 +$ unzip MapSplice-v2.2.0.zip
 +$ cd MapSplice-v2.2.0
 +$ scl enable devtoolset-2 bash
 +$ module load samtools/​1.2 bowtie/​1.1.2
 +$ make
 +$ sudo cp -r bin/* /​export/​apps/​mapsplice/​2.2.0/​
 +</​code>​
mapsplice-software.txt · Last modified: 2016/03/24 16:49 by joguya