User Tools

Site Tools


lordec-software

Table of Contents

lordec

LoRDEC processes data coming from high throughput sequencing machines of the second and third generations. These data are called sequencing reads, or simply reads for short. Technically speaking it processes short reads and long reads to correct errors in the long reads.

Information

Usage

See versions which are available:

$ module avail lordec

Load one version into your environment and run it:

$ module load lordec/0.9
$ lordec-correct
$ lordec-trim

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://gite.lirmm.fr/lordec/lordec-releases/uploads/800a96d81b3348e368a0ff3a260a88e1/lordec-src_0.9.tar.bz2
$ tar xf lordec-src_0.9.tar.bz2
$ cd lordec-src_0.9
$ sed -i -e 's/cmake/cmake3/' Makefile
$ make clean all -j4
$ sudo mkdir -p /export/apps/lordec/0.9/bin
$ sudo cp lordec-build-SR-graph lordec-correct lordec_sge_slurm_wrapper.sh lordec-stat lordec-trim lordec-trim-split /export/apps/lordec/0.9/bin
$ sudo cp CHANGELOG.md LICENSE README.md /export/apps/lordec/0.9
lordec-software.txt · Last modified: 2019/07/09 17:22 by aorth