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list-of-software [2020/05/04 18:45]
aorth
list-of-software [2020/07/01 12:44] (current)
aorth
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 |[[bowtie2-software|bowtie2 ]]|2.3.4.1|''​module load bowtie2/​2.3.4.1''​| | |[[bowtie2-software|bowtie2 ]]|2.3.4.1|''​module load bowtie2/​2.3.4.1''​| |
 |[[brig-software|brig]]|0.95|''​module load brig/​0.95''​| | |[[brig-software|brig]]|0.95|''​module load brig/​0.95''​| |
-|[[busco-software|BUSCO ]]|3.0.2|''​module load BUSCO/3.0.2''​| | +|[[busco-software|BUSCO ]]|4.0.6|''​module load BUSCO/4.0.6''​| | 
-|[[bwa-software|bwa]]|0.7.15|''​module load bwa/0.7.15''​| |+|[[bwa-software|bwa]]|0.7.17|''​module load bwa/0.7.17''​| |
 |[[cafe-software|cafe]]|4.1|''​module load cafe/​4.1''​| | |[[cafe-software|cafe]]|4.1|''​module load cafe/​4.1''​| |
 |cangs|1.1|''​module load cangs/​1.1''​| | |cangs|1.1|''​module load cangs/​1.1''​| |
Line 53: Line 53:
 |celera-wgs|6.1|''​module load celera-wgs/​6.1''​| | |celera-wgs|6.1|''​module load celera-wgs/​6.1''​| |
 |censor|4.2.28|''​module load censor/​4.2.28''​| | |censor|4.2.28|''​module load censor/​4.2.28''​| |
-|[[changeo-software|changeo]]|0.3.9|''​module load changeo/0.3.9''​| |+|[[changeo-software|changeo]]|1.0.0|''​module load changeo/1.0.0''​| |
 |[[checkm-software|checkm]]|1.1.2|''​module load checkm/​1.1.2''​| | |[[checkm-software|checkm]]|1.1.2|''​module load checkm/​1.1.2''​| |
 |[[circos-software|circos]]|0.69-9|''​module load circos/​0.69-9''​| | |[[circos-software|circos]]|0.69-9|''​module load circos/​0.69-9''​| |
Line 82: Line 82:
 |[[fastqc-software|fastqc]]|0.11.7|''​module load fastqc/​0.11.7''​| | |[[fastqc-software|fastqc]]|0.11.7|''​module load fastqc/​0.11.7''​| |
 |[[faststructure-software|fastSTRUCTURE]]|1.0|''​module load fastSTRUCTURE/​1.0''​| | |[[faststructure-software|fastSTRUCTURE]]|1.0|''​module load fastSTRUCTURE/​1.0''​| |
 +|[[fasttree-software|fasttree]]|2.1.11|''​module load fasttree/​2.1.11''​| |
 |[[fastx-toolkit-software|fastx_toolkit]]|0.0.13|''​module load fastx_toolkit/​0.0.13''​| | |[[fastx-toolkit-software|fastx_toolkit]]|0.0.13|''​module load fastx_toolkit/​0.0.13''​| |
 |figtree|1.4.0|''​module load figtree/​1.4.0''​| | |figtree|1.4.0|''​module load figtree/​1.4.0''​| |
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 |[[groovy-software|groovy]]|2.4.9|''​module load groovy/​2.4.9''​| | |[[groovy-software|groovy]]|2.4.9|''​module load groovy/​2.4.9''​| |
 |[[gsea-software|GSEA]]|2.2.3|''​module load gsea/​2.2.3''​| | |[[gsea-software|GSEA]]|2.2.3|''​module load gsea/​2.2.3''​| |
 +|[[gtdbtk-software|gtdbtk]]|1.1.1|''​module load gtdbtk/​1.1.1''​| |
 |[[guidance-software|guidance]]|2.02|''​module load guidance/​2.02''​| | |[[guidance-software|guidance]]|2.02|''​module load guidance/​2.02''​| |
 |[[hapflk-software|hapflk]]|1.4|''​module load hapflk/​1.4''​| | |[[hapflk-software|hapflk]]|1.4|''​module load hapflk/​1.4''​| |
Line 174: Line 176:
 |mkatari-ilri|latest|''​module load mkatari-ilri/​latest''​| | |mkatari-ilri|latest|''​module load mkatari-ilri/​latest''​| |
 |[[modeller-software|modeller]]|9.17|''​module load modeller/​9.17''​| | |[[modeller-software|modeller]]|9.17|''​module load modeller/​9.17''​| |
-|[[mothur-software|mothur]]|1.39.5|''​module load mothur/1.39.5''​| |+|[[mothur-software|mothur]]|1.44.1|''​module load mothur/1.44.1''​| |
 |[[mothur-krona-software|mothur-krona]]|git-87499a0|''​module load mothur-krona/​git-87499a0''​| | |[[mothur-krona-software|mothur-krona]]|git-87499a0|''​module load mothur-krona/​git-87499a0''​| |
 |mpiblast|1.6.0|''​module load mpiblast/​1.6.0''​| | |mpiblast|1.6.0|''​module load mpiblast/​1.6.0''​| |
Line 201: Line 203:
 |[[pblat-software|pblat]]|2.1|''​module load pblat/​2.1''​| | |[[pblat-software|pblat]]|2.1|''​module load pblat/​2.1''​| |
 |[[pbsuite-software|pbsuite]]|15.8.24|''​module load pbsuite/​15.8.24''​| | |[[pbsuite-software|pbsuite]]|15.8.24|''​module load pbsuite/​15.8.24''​| |
-|[[perl-software|perl]]|5.22.3|''​module load perl/5.22.3''​| |+|[[perl-software|perl]]|5.28.2|''​module load perl/5.28.2''​| |
 |[[pgdspider-software|PGDSpider]]|2.1.1.0|''​module load pgdspider/​2.1.1.0''​| | |[[pgdspider-software|PGDSpider]]|2.1.1.0|''​module load pgdspider/​2.1.1.0''​| |
 |phrap|1.080812|''​module load phrap/​1.080812''​| | |phrap|1.080812|''​module load phrap/​1.080812''​| |
Line 220: Line 222:
 |[[prinseq-software|prinseq]]|0.20.4|''​module load prinseq/​0.20.4''​| | |[[prinseq-software|prinseq]]|0.20.4|''​module load prinseq/​0.20.4''​| |
 |[[prodigal-software|prodigal]]|2.6.3|''​module load prodigal/​2.6.3''​| | |[[prodigal-software|prodigal]]|2.6.3|''​module load prodigal/​2.6.3''​| |
-|[[prokka-software|prokka]]|1.11|''​module load prokka/1.11''​| |+|[[prokka-software|prokka]]|1.14.6|''​module load prokka/1.14.6''​| |
 |[[provean-software|provean]]|1.1.5|''​module load provean/​1.1.5''​| | |[[provean-software|provean]]|1.1.5|''​module load provean/​1.1.5''​| |
 |[[python-software|python]]|3.7.7|''​module load python/​3.7''​| | |[[python-software|python]]|3.7.7|''​module load python/​3.7''​| |
Line 249: Line 251:
 |[[scipio-software|scipio]]|1.4.1|''​module load scipio/​1.4.1''​| | |[[scipio-software|scipio]]|1.4.1|''​module load scipio/​1.4.1''​| |
 |[[scythe-software|scythe]]|0.994-beta|''​module load scythe/​0.994-beta''​| | |[[scythe-software|scythe]]|0.994-beta|''​module load scythe/​0.994-beta''​| |
 +|[[sepp-software|sepp]]|4.3.8|''​module load sepp/​4.3.8''​| |
 |[[seroba-software|seroba]]|1.0.0|''​module load seroba/​1.0.0''​| | |[[seroba-software|seroba]]|1.0.0|''​module load seroba/​1.0.0''​| |
 |seq_crumbs|0.1.8|''​module load seq_crumbs/​0.1.8''​| | |seq_crumbs|0.1.8|''​module load seq_crumbs/​0.1.8''​| |
list-of-software.1588617901.txt.gz · Last modified: 2020/05/04 18:45 by aorth