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list-of-software [2020/04/27 13:11]
aorth
list-of-software [2020/07/01 12:44] (current)
aorth
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 |[[bowtie2-software|bowtie2 ]]|2.3.4.1|''​module load bowtie2/​2.3.4.1''​| | |[[bowtie2-software|bowtie2 ]]|2.3.4.1|''​module load bowtie2/​2.3.4.1''​| |
 |[[brig-software|brig]]|0.95|''​module load brig/​0.95''​| | |[[brig-software|brig]]|0.95|''​module load brig/​0.95''​| |
-|[[busco-software|BUSCO ]]|3.0.2|''​module load BUSCO/3.0.2''​| | +|[[busco-software|BUSCO ]]|4.0.6|''​module load BUSCO/4.0.6''​| | 
-|[[bwa-software|bwa]]|0.7.15|''​module load bwa/0.7.15''​| |+|[[bwa-software|bwa]]|0.7.17|''​module load bwa/0.7.17''​| |
 |[[cafe-software|cafe]]|4.1|''​module load cafe/​4.1''​| | |[[cafe-software|cafe]]|4.1|''​module load cafe/​4.1''​| |
 |cangs|1.1|''​module load cangs/​1.1''​| | |cangs|1.1|''​module load cangs/​1.1''​| |
Line 53: Line 53:
 |celera-wgs|6.1|''​module load celera-wgs/​6.1''​| | |celera-wgs|6.1|''​module load celera-wgs/​6.1''​| |
 |censor|4.2.28|''​module load censor/​4.2.28''​| | |censor|4.2.28|''​module load censor/​4.2.28''​| |
-|[[changeo-software|changeo]]|0.3.9|''​module load changeo/0.3.9''​| |+|[[changeo-software|changeo]]|1.0.0|''​module load changeo/1.0.0''​| |
 |[[checkm-software|checkm]]|1.1.2|''​module load checkm/​1.1.2''​| | |[[checkm-software|checkm]]|1.1.2|''​module load checkm/​1.1.2''​| |
 |[[circos-software|circos]]|0.69-9|''​module load circos/​0.69-9''​| | |[[circos-software|circos]]|0.69-9|''​module load circos/​0.69-9''​| |
Line 78: Line 78:
 |[[exabayes-software|exabayes]]|1.4.1|''​module load exabayes/​1.4.1''​| | |[[exabayes-software|exabayes]]|1.4.1|''​module load exabayes/​1.4.1''​| |
 |[[express-software|express]]|1.5.1|''​module load express/​1.5.1''​| | |[[express-software|express]]|1.5.1|''​module load express/​1.5.1''​| |
 +|[[fastANI-software|fastANI]]|1.3|''​module load fastANI/​1.3''​| |
 |[[fastPHASE-software|fastPHASE]]|1.4.8|''​module load fastPHASE/​1.4.8''​| | |[[fastPHASE-software|fastPHASE]]|1.4.8|''​module load fastPHASE/​1.4.8''​| |
 |[[fastqc-software|fastqc]]|0.11.7|''​module load fastqc/​0.11.7''​| | |[[fastqc-software|fastqc]]|0.11.7|''​module load fastqc/​0.11.7''​| |
 |[[faststructure-software|fastSTRUCTURE]]|1.0|''​module load fastSTRUCTURE/​1.0''​| | |[[faststructure-software|fastSTRUCTURE]]|1.0|''​module load fastSTRUCTURE/​1.0''​| |
 +|[[fasttree-software|fasttree]]|2.1.11|''​module load fasttree/​2.1.11''​| |
 |[[fastx-toolkit-software|fastx_toolkit]]|0.0.13|''​module load fastx_toolkit/​0.0.13''​| | |[[fastx-toolkit-software|fastx_toolkit]]|0.0.13|''​module load fastx_toolkit/​0.0.13''​| |
 |figtree|1.4.0|''​module load figtree/​1.4.0''​| | |figtree|1.4.0|''​module load figtree/​1.4.0''​| |
Line 106: Line 108:
 |[[groovy-software|groovy]]|2.4.9|''​module load groovy/​2.4.9''​| | |[[groovy-software|groovy]]|2.4.9|''​module load groovy/​2.4.9''​| |
 |[[gsea-software|GSEA]]|2.2.3|''​module load gsea/​2.2.3''​| | |[[gsea-software|GSEA]]|2.2.3|''​module load gsea/​2.2.3''​| |
 +|[[gtdbtk-software|gtdbtk]]|1.1.1|''​module load gtdbtk/​1.1.1''​| |
 |[[guidance-software|guidance]]|2.02|''​module load guidance/​2.02''​| | |[[guidance-software|guidance]]|2.02|''​module load guidance/​2.02''​| |
 |[[hapflk-software|hapflk]]|1.4|''​module load hapflk/​1.4''​| | |[[hapflk-software|hapflk]]|1.4|''​module load hapflk/​1.4''​| |
Line 148: Line 151:
 |[[marginalign-software|marginalign]]|git-2369dafd|''​module load marginalign/​git-2369dafd''​| | |[[marginalign-software|marginalign]]|git-2369dafd|''​module load marginalign/​git-2369dafd''​| |
 |[[marginpolish-software|marginpolish]]|1.0.0|''​module load marginpolish/​1.0.0''​| | |[[marginpolish-software|marginpolish]]|1.0.0|''​module load marginpolish/​1.0.0''​| |
-|[[mash-software|mash]]|2.0|''​module load mash/2.0''​| |+|[[mash-software|mash]]|2.2|''​module load mash/2.2''​| |
 |[[masurca-software|masurca]]|3.3.1|''​module load masurca/​3.3.1''​| | |[[masurca-software|masurca]]|3.3.1|''​module load masurca/​3.3.1''​| |
 |mauve|2.3.1|''​module load mauve/​2.3.1''​| | |mauve|2.3.1|''​module load mauve/​2.3.1''​| |
Line 167: Line 170:
 |[[minimap2-software|minimap2]]|2.13|''​module load minimap2/​2.13''​| | |[[minimap2-software|minimap2]]|2.13|''​module load minimap2/​2.13''​| |
 |[[minpath-software|MinPath]]|1.0.2|''​module load MinPath/​1.2''​| | |[[minpath-software|MinPath]]|1.0.2|''​module load MinPath/​1.2''​| |
-|[[mira-software#​v4.0.2|mira ]]|4.0.2|''​module load mira/​4.0.2''​| |+|[[mira-software#​v4.0.2|mira]]|4.0.2|''​module load mira/4.0.2''​| | 
 +|[[mirdeep2-software|mirdeep2]]|0.1.3|''​module load mirdeep2/​0.1.3''​| |
 |[[mitools-software|mitools]]|1.4|''​module load mitools/​1.4''​| | |[[mitools-software|mitools]]|1.4|''​module load mitools/​1.4''​| |
 |[[mixcr-software|mixcr]]|3.0.11|''​module load mixcr/​3.0.11''​| | |[[mixcr-software|mixcr]]|3.0.11|''​module load mixcr/​3.0.11''​| |
 |mkatari-ilri|latest|''​module load mkatari-ilri/​latest''​| | |mkatari-ilri|latest|''​module load mkatari-ilri/​latest''​| |
 |[[modeller-software|modeller]]|9.17|''​module load modeller/​9.17''​| | |[[modeller-software|modeller]]|9.17|''​module load modeller/​9.17''​| |
-|[[mothur-software|mothur]]|1.39.5|''​module load mothur/1.39.5''​| |+|[[mothur-software|mothur]]|1.44.1|''​module load mothur/1.44.1''​| |
 |[[mothur-krona-software|mothur-krona]]|git-87499a0|''​module load mothur-krona/​git-87499a0''​| | |[[mothur-krona-software|mothur-krona]]|git-87499a0|''​module load mothur-krona/​git-87499a0''​| |
 |mpiblast|1.6.0|''​module load mpiblast/​1.6.0''​| | |mpiblast|1.6.0|''​module load mpiblast/​1.6.0''​| |
Line 199: Line 203:
 |[[pblat-software|pblat]]|2.1|''​module load pblat/​2.1''​| | |[[pblat-software|pblat]]|2.1|''​module load pblat/​2.1''​| |
 |[[pbsuite-software|pbsuite]]|15.8.24|''​module load pbsuite/​15.8.24''​| | |[[pbsuite-software|pbsuite]]|15.8.24|''​module load pbsuite/​15.8.24''​| |
-|[[perl-software|perl]]|5.22.3|''​module load perl/5.22.3''​| |+|[[perl-software|perl]]|5.28.2|''​module load perl/5.28.2''​| |
 |[[pgdspider-software|PGDSpider]]|2.1.1.0|''​module load pgdspider/​2.1.1.0''​| | |[[pgdspider-software|PGDSpider]]|2.1.1.0|''​module load pgdspider/​2.1.1.0''​| |
 |phrap|1.080812|''​module load phrap/​1.080812''​| | |phrap|1.080812|''​module load phrap/​1.080812''​| |
Line 218: Line 222:
 |[[prinseq-software|prinseq]]|0.20.4|''​module load prinseq/​0.20.4''​| | |[[prinseq-software|prinseq]]|0.20.4|''​module load prinseq/​0.20.4''​| |
 |[[prodigal-software|prodigal]]|2.6.3|''​module load prodigal/​2.6.3''​| | |[[prodigal-software|prodigal]]|2.6.3|''​module load prodigal/​2.6.3''​| |
-|[[prokka-software|prokka]]|1.11|''​module load prokka/1.11''​| |+|[[prokka-software|prokka]]|1.14.6|''​module load prokka/1.14.6''​| |
 |[[provean-software|provean]]|1.1.5|''​module load provean/​1.1.5''​| | |[[provean-software|provean]]|1.1.5|''​module load provean/​1.1.5''​| |
 |[[python-software|python]]|3.7.7|''​module load python/​3.7''​| | |[[python-software|python]]|3.7.7|''​module load python/​3.7''​| |
Line 230: Line 234:
 |[[racon-software|racon]]|1.3.1|''​module load racon/​1.3.1''​| | |[[racon-software|racon]]|1.3.1|''​module load racon/​1.3.1''​| |
 |[[rmblast-software|rmblast]]|2.2.28|''​module load rmblast/​2.2.28''​| | |[[rmblast-software|rmblast]]|2.2.28|''​module load rmblast/​2.2.28''​| |
-|rapsearch|2.10|''​module load rapsearch/​2.10''​| |+|[[rapsearch-software|rapsearch]]|2.22|''​module load rapsearch/​2.22''​| |
 |[[ratt-software|RATT]]|r18|''​module load ratt/​r18''​| | |[[ratt-software|RATT]]|r18|''​module load ratt/​r18''​| |
 |[[raxml-software|RAxML]]|8.2.12|''​module load RAxML/​8.2.12''​| | |[[raxml-software|RAxML]]|8.2.12|''​module load RAxML/​8.2.12''​| |
Line 247: Line 251:
 |[[scipio-software|scipio]]|1.4.1|''​module load scipio/​1.4.1''​| | |[[scipio-software|scipio]]|1.4.1|''​module load scipio/​1.4.1''​| |
 |[[scythe-software|scythe]]|0.994-beta|''​module load scythe/​0.994-beta''​| | |[[scythe-software|scythe]]|0.994-beta|''​module load scythe/​0.994-beta''​| |
 +|[[sepp-software|sepp]]|4.3.8|''​module load sepp/​4.3.8''​| |
 |[[seroba-software|seroba]]|1.0.0|''​module load seroba/​1.0.0''​| | |[[seroba-software|seroba]]|1.0.0|''​module load seroba/​1.0.0''​| |
 |seq_crumbs|0.1.8|''​module load seq_crumbs/​0.1.8''​| | |seq_crumbs|0.1.8|''​module load seq_crumbs/​0.1.8''​| |
list-of-software.1587993114.txt.gz · Last modified: 2020/04/27 13:11 by aorth