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list-of-software [2019/11/04 10:43]
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list-of-software [2020/05/17 16:25] (current)
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 |[[artemis-software|artemis]]|16.0.0|''​module load act/​16.0.0''​| | |[[artemis-software|artemis]]|16.0.0|''​module load act/​16.0.0''​| |
 |[[augustus-software|augustus]]|3.3|''​module load augustus/​3.3''​| | |[[augustus-software|augustus]]|3.3|''​module load augustus/​3.3''​| |
 +|[[awscli-software|awscli]]|1.17.9|''​module load awscli/​1.17.9''​| |
 |[[bam-readcount-software|bam-readcount]]|0.8.0|''​module load bam-readcount/​0.8.0''​| | |[[bam-readcount-software|bam-readcount]]|0.8.0|''​module load bam-readcount/​0.8.0''​| |
 |[[bamtools-software|bamtools]]|2.5.1|''​module load bamtools/​2.5.1''​| | |[[bamtools-software|bamtools]]|2.5.1|''​module load bamtools/​2.5.1''​| |
Line 36: Line 37:
 |[[bitseq-software|bitseq]]|0.7.5|''​module load bitseq/​0.7.5''​| | |[[bitseq-software|bitseq]]|0.7.5|''​module load bitseq/​0.7.5''​| |
 |[[blasr-software|blasr]]|smrtanalysis-4.0.0|''​module load blasr/​smrtanalysis-4.0.0''​| | |[[blasr-software|blasr]]|smrtanalysis-4.0.0|''​module load blasr/​smrtanalysis-4.0.0''​| |
-|[[blast-software|blast]]|2.6.0+|''​module load blast/2.6.0+''​| |+|[[blast-software|blast]]|2.10.0+|''​module load blast/2.10.0+''​| |
 |[[blobtools-software|blobtools]]|0.9.19.3|''​module load blobtools/​0.9.19.3''​| | |[[blobtools-software|blobtools]]|0.9.19.3|''​module load blobtools/​0.9.19.3''​| |
 |blat|06-Aug-2013|''​module load blat/​06-Aug-2013''​| | |blat|06-Aug-2013|''​module load blat/​06-Aug-2013''​| |
-|[[bowtie-software|bowtie1 ]]|1.1.1|''​module load bowtie/1.1.1''​| |+|[[bowtie-software|bowtie1 ]]|1.2.3|''​module load bowtie/1.2.3''​| |
 |[[bowtie2-software|bowtie2 ]]|2.3.4.1|''​module load bowtie2/​2.3.4.1''​| | |[[bowtie2-software|bowtie2 ]]|2.3.4.1|''​module load bowtie2/​2.3.4.1''​| |
 |[[brig-software|brig]]|0.95|''​module load brig/​0.95''​| | |[[brig-software|brig]]|0.95|''​module load brig/​0.95''​| |
-|[[busco-software|BUSCO ]]|3.0.2|''​module load BUSCO/3.0.2''​| |+|[[busco-software|BUSCO ]]|4.0.6|''​module load BUSCO/4.0.6''​| |
 |[[bwa-software|bwa]]|0.7.15|''​module load bwa/​0.7.15''​| | |[[bwa-software|bwa]]|0.7.15|''​module load bwa/​0.7.15''​| |
 |[[cafe-software|cafe]]|4.1|''​module load cafe/​4.1''​| | |[[cafe-software|cafe]]|4.1|''​module load cafe/​4.1''​| |
Line 53: Line 54:
 |censor|4.2.28|''​module load censor/​4.2.28''​| | |censor|4.2.28|''​module load censor/​4.2.28''​| |
 |[[changeo-software|changeo]]|0.3.9|''​module load changeo/​0.3.9''​| | |[[changeo-software|changeo]]|0.3.9|''​module load changeo/​0.3.9''​| |
-|[[circos-software|circos]]|0.67|''​module load circos/0.67''​| |+|[[checkm-software|checkm]]|1.1.2|''​module load checkm/​1.1.2''​| | 
 +|[[circos-software|circos]]|0.69-9|''​module load circos/0.69-9''​| |
 |[[clonalframe-software|clonalframe]]|1.2|''​module load clonalframe/​1.2''​| | |[[clonalframe-software|clonalframe]]|1.2|''​module load clonalframe/​1.2''​| |
 |[[clonalframeml-software|clonalframeml]]|1.0|''​module load clonalframeml/​1.0''​| | |[[clonalframeml-software|clonalframeml]]|1.0|''​module load clonalframeml/​1.0''​| |
Line 67: Line 69:
 |dendroscope|2.7.4|''​module load dendroscope/​2.7.4''​| | |dendroscope|2.7.4|''​module load dendroscope/​2.7.4''​| |
 |[[diamond-software|diamond]]|0.9.9|''​module load diamond/​0.9.9''​| | |[[diamond-software|diamond]]|0.9.9|''​module load diamond/​0.9.9''​| |
 +|[[drep-software|drep]]|2.5.4|''​module load drep/​2.5.4''​| |
 |[[ea-utils-software|ea-utils]]|1.04.807|''​module load ea-utils/​1.04.807''​| | |[[ea-utils-software|ea-utils]]|1.04.807|''​module load ea-utils/​1.04.807''​| |
 |[[edirect-software|edirect]]| 7.80 | ''​module load edirect/​7.80''​ | | |[[edirect-software|edirect]]| 7.80 | ''​module load edirect/​7.80''​ | |
Line 75: Line 78:
 |[[exabayes-software|exabayes]]|1.4.1|''​module load exabayes/​1.4.1''​| | |[[exabayes-software|exabayes]]|1.4.1|''​module load exabayes/​1.4.1''​| |
 |[[express-software|express]]|1.5.1|''​module load express/​1.5.1''​| | |[[express-software|express]]|1.5.1|''​module load express/​1.5.1''​| |
 +|[[fastANI-software|fastANI]]|1.3|''​module load fastANI/​1.3''​| |
 |[[fastPHASE-software|fastPHASE]]|1.4.8|''​module load fastPHASE/​1.4.8''​| | |[[fastPHASE-software|fastPHASE]]|1.4.8|''​module load fastPHASE/​1.4.8''​| |
 |[[fastqc-software|fastqc]]|0.11.7|''​module load fastqc/​0.11.7''​| | |[[fastqc-software|fastqc]]|0.11.7|''​module load fastqc/​0.11.7''​| |
 |[[faststructure-software|fastSTRUCTURE]]|1.0|''​module load fastSTRUCTURE/​1.0''​| | |[[faststructure-software|fastSTRUCTURE]]|1.0|''​module load fastSTRUCTURE/​1.0''​| |
 +|[[fasttree-software|fasttree]]|2.1.11|''​module load fasttree/​2.1.11''​| |
 |[[fastx-toolkit-software|fastx_toolkit]]|0.0.13|''​module load fastx_toolkit/​0.0.13''​| | |[[fastx-toolkit-software|fastx_toolkit]]|0.0.13|''​module load fastx_toolkit/​0.0.13''​| |
 |figtree|1.4.0|''​module load figtree/​1.4.0''​| | |figtree|1.4.0|''​module load figtree/​1.4.0''​| |
Line 87: Line 92:
 |[[flye-software|flye]]|2.4.2|''​module load flye/​2.4.2''​| | |[[flye-software|flye]]|2.4.2|''​module load flye/​2.4.2''​| |
 |frappe|1.1|''​module load frappe/​1.1''​| | |frappe|1.1|''​module load frappe/​1.1''​| |
-|[[fraggenescan-software|FragGeneScan ]]|1.19|''​module load fraggenescan/​1.19''​| |+|[[fraggenescan-software|FragGeneScan ]]|1.30|''​module load fraggenescan/​1.30''​| |
 |[[freebayes-software|FreeBayes ]]|1.0.2|''​module load freebayes/​1.0.2''​| | |[[freebayes-software|FreeBayes ]]|1.0.2|''​module load freebayes/​1.0.2''​| |
 |[[gassflow-software|GassFlow ]]|1.0|''​module load gassflow/​1.0''​| | |[[gassflow-software|GassFlow ]]|1.0|''​module load gassflow/​1.0''​| |
Line 103: Line 108:
 |[[groovy-software|groovy]]|2.4.9|''​module load groovy/​2.4.9''​| | |[[groovy-software|groovy]]|2.4.9|''​module load groovy/​2.4.9''​| |
 |[[gsea-software|GSEA]]|2.2.3|''​module load gsea/​2.2.3''​| | |[[gsea-software|GSEA]]|2.2.3|''​module load gsea/​2.2.3''​| |
 +|[[gtdbtk-software|gtdbtk]]|1.1.1|''​module load gtdbtk/​1.1.1''​| |
 |[[guidance-software|guidance]]|2.02|''​module load guidance/​2.02''​| | |[[guidance-software|guidance]]|2.02|''​module load guidance/​2.02''​| |
 |[[hapflk-software|hapflk]]|1.4|''​module load hapflk/​1.4''​| | |[[hapflk-software|hapflk]]|1.4|''​module load hapflk/​1.4''​| |
 |hapmix|2.0|''​module load hapmix/​2.0''​| | |hapmix|2.0|''​module load hapmix/​2.0''​| |
 |[[hdf5-software|hdf5]]|1.8.19|''​module load hdf5/​1.8.19''​| | |[[hdf5-software|hdf5]]|1.8.19|''​module load hdf5/​1.8.19''​| |
-|[[hmmer-software|hmmer]]|3.1b2|''​module load hmmer/3.1b2''​| |+|[[hmmer-software|hmmer]]|3.3|''​module load hmmer/3.3''​| |
 |[[hpg-variant-software|hpg-variant]]|1.0|''​module load hpg-variant/​1.0''​| | |[[hpg-variant-software|hpg-variant]]|1.0|''​module load hpg-variant/​1.0''​| |
 |[[hisat2-software|hisat2]]|2.1.0|''​module load hisat2/​2.1.0''​| | |[[hisat2-software|hisat2]]|2.1.0|''​module load hisat2/​2.1.0''​| |
 |[[htseq-software|htseq]]|0.9.1|''​module load htseq/​0.9.1''​| | |[[htseq-software|htseq]]|0.9.1|''​module load htseq/​0.9.1''​| |
 |[[htslib-software|htslib]]|1.9|''​module load htslib/​1.9''​| | |[[htslib-software|htslib]]|1.9|''​module load htslib/​1.9''​| |
-|[[igblast-software|igblast]]|1.6.0|''​module load igblast/1.6.0''​| |+|[[idba-software|idba]]|1.1.2|''​module load idba/​1.1.2''​| | 
 +|[[igblast-software|igblast]]|1.10.0|''​module load igblast/1.10.0''​| | 
 +|[[igdiscover-software|igdiscover]]|0.12.3|''​module load igdiscover/​0.12.3''​| |
 |[[igrec-software|igrec]]|3.0.0|''​module load igrec/​3.0.0''​| | |[[igrec-software|igrec]]|3.0.0|''​module load igrec/​3.0.0''​| |
 +|[[igsimulator-software|igsimulator]]|git-c3778b74|''​module load igsimulator/​git-c3778b74''​| |
 |[[igv-software|igv]]|2.4.5|''​module load igv/​2.4.5''​| | |[[igv-software|igv]]|2.4.5|''​module load igv/​2.4.5''​| |
 |[[igvtools-software|igvtools]]|2.3.98|''​module load igvtools/​2.3.98''​| | |[[igvtools-software|igvtools]]|2.3.98|''​module load igvtools/​2.3.98''​| |
Line 142: Line 151:
 |[[marginalign-software|marginalign]]|git-2369dafd|''​module load marginalign/​git-2369dafd''​| | |[[marginalign-software|marginalign]]|git-2369dafd|''​module load marginalign/​git-2369dafd''​| |
 |[[marginpolish-software|marginpolish]]|1.0.0|''​module load marginpolish/​1.0.0''​| | |[[marginpolish-software|marginpolish]]|1.0.0|''​module load marginpolish/​1.0.0''​| |
-|[[mash-software|mash]]|2.0|''​module load mash/2.0''​| |+|[[mash-software|mash]]|2.2|''​module load mash/2.2''​| |
 |[[masurca-software|masurca]]|3.3.1|''​module load masurca/​3.3.1''​| | |[[masurca-software|masurca]]|3.3.1|''​module load masurca/​3.3.1''​| |
 |mauve|2.3.1|''​module load mauve/​2.3.1''​| | |mauve|2.3.1|''​module load mauve/​2.3.1''​| |
 +|[[maxbin2-software|maxbin2]]|2.2.7|''​module load maxbin2/​2.2.7''​| |
 |maximus|0.2|''​module load maximus/​0.2''​| | |maximus|0.2|''​module load maximus/​0.2''​| |
 |[[mcl-software|mcl]]|14-137|''​module load mcl/​14-137''​| | |[[mcl-software|mcl]]|14-137|''​module load mcl/​14-137''​| |
Line 153: Line 163:
 |[[megax-software|megax]]|10.0.5|''​module load megax/​10.0.5''​| | |[[megax-software|megax]]|10.0.5|''​module load megax/​10.0.5''​| |
 |[[metabat-software|metabat]]|2.12.1|''​module load metabat/​2.12.1''​| | |[[metabat-software|metabat]]|2.12.1|''​module load metabat/​2.12.1''​| |
 +|[[metaphlan2-software|metaphlan2]]|2.9.5|''​module load metaphlan2/​2.9.5''​| |
 |[[metis-software|metis]]|5.1.0|''​module load metis/​5.1.0''​| | |[[metis-software|metis]]|5.1.0|''​module load metis/​5.1.0''​| |
 |[[migec-software|migec]]|1.2.4a|''​module load migec/​1.2.4a''​| | |[[migec-software|migec]]|1.2.4a|''​module load migec/​1.2.4a''​| |
Line 159: Line 170:
 |[[minimap2-software|minimap2]]|2.13|''​module load minimap2/​2.13''​| | |[[minimap2-software|minimap2]]|2.13|''​module load minimap2/​2.13''​| |
 |[[minpath-software|MinPath]]|1.0.2|''​module load MinPath/​1.2''​| | |[[minpath-software|MinPath]]|1.0.2|''​module load MinPath/​1.2''​| |
-|[[mira-software#​v4.0.2|mira ]]|4.0.2|''​module load mira/​4.0.2''​| |+|[[mira-software#​v4.0.2|mira]]|4.0.2|''​module load mira/4.0.2''​| | 
 +|[[mirdeep2-software|mirdeep2]]|0.1.3|''​module load mirdeep2/​0.1.3''​| |
 |[[mitools-software|mitools]]|1.4|''​module load mitools/​1.4''​| | |[[mitools-software|mitools]]|1.4|''​module load mitools/​1.4''​| |
 |[[mixcr-software|mixcr]]|3.0.11|''​module load mixcr/​3.0.11''​| | |[[mixcr-software|mixcr]]|3.0.11|''​module load mixcr/​3.0.11''​| |
Line 169: Line 181:
 |mrbayes|3.2.2|''​module load mrbayes/​3.2.2''​| | |mrbayes|3.2.2|''​module load mrbayes/​3.2.2''​| |
 |[[multiqc-software|multiqc]]|1.4|''​module load multiqc/​1.4''​| | |[[multiqc-software|multiqc]]|1.4|''​module load multiqc/​1.4''​| |
-|[[muscle-software|muscle]]|3.8.31|''​module load muscle/3.8.31''​| ​ |+|[[muscle-software|muscle]]|3.8.1551|''​module load muscle/3.8.1551''​| ​ |
 |[[mummer-software|MUMmer]]|3.23|''​module load MUMmer/​3.23''​| | |[[mummer-software|MUMmer]]|3.23|''​module load MUMmer/​3.23''​| |
 |[[nanopolish-software|nanopolish]]|0.10.2|''​module load nanopolish/​0.10.2''​| | |[[nanopolish-software|nanopolish]]|0.10.2|''​module load nanopolish/​0.10.2''​| |
 |[[netmhcpan-software|netmhcpan]]|2.8|''​module load netmhcpan/​2.8''​| | |[[netmhcpan-software|netmhcpan]]|2.8|''​module load netmhcpan/​2.8''​| |
 |[[nextclip-software|nextclip]]|1.3.1|''​module load nextclip/​1.3.1''​| | |[[nextclip-software|nextclip]]|1.3.1|''​module load nextclip/​1.3.1''​| |
 +|[[nextflow-software|nextflow]]|19.10.0|''​module load nextflow/​19.10.0''​| |
 |[[ntcard-software|ntCard]]|1.0.0|''​module load ntCard/​1.0.0''​| | |[[ntcard-software|ntCard]]|1.0.0|''​module load ntCard/​1.0.0''​| |
 |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|''​module load ngsqctoolkit/​2.3.3''​| | |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|''​module load ngsqctoolkit/​2.3.3''​| |
Line 187: Line 200:
 |[[pandaseq-software|pandaseq]]|2.8.1|''​module load pandaseq/​2.8.1''​| ​ | |[[pandaseq-software|pandaseq]]|2.8.1|''​module load pandaseq/​2.8.1''​| ​ |
 |[[pasta-software|pasta]]|d939adb2|''​module load pasta/​d939adb2''​| ​ | |[[pasta-software|pasta]]|d939adb2|''​module load pasta/​d939adb2''​| ​ |
-|[[pear-software|pear]]|git-2c309dc|''​module load pear/git-2c309dc''​| |+|[[pear-software|pear]]|0.9.6|''​module load pear/0.9.6''​| |
 |[[pblat-software|pblat]]|2.1|''​module load pblat/​2.1''​| | |[[pblat-software|pblat]]|2.1|''​module load pblat/​2.1''​| |
 |[[pbsuite-software|pbsuite]]|15.8.24|''​module load pbsuite/​15.8.24''​| | |[[pbsuite-software|pbsuite]]|15.8.24|''​module load pbsuite/​15.8.24''​| |
-|[[perl-software|perl]]|5.22.3|''​module load perl/5.22.3''​| |+|[[perl-software|perl]]|5.28.2|''​module load perl/5.28.2''​| |
 |[[pgdspider-software|PGDSpider]]|2.1.1.0|''​module load pgdspider/​2.1.1.0''​| | |[[pgdspider-software|PGDSpider]]|2.1.1.0|''​module load pgdspider/​2.1.1.0''​| |
 |phrap|1.080812|''​module load phrap/​1.080812''​| | |phrap|1.080812|''​module load phrap/​1.080812''​| |
Line 200: Line 213:
 |[[pilon-software|pilon]]|1.23|''​module load pilon/​1.23''​| | |[[pilon-software|pilon]]|1.23|''​module load pilon/​1.23''​| |
 |[[platanus-software|platanus]]|1.2.1|''​module load platanus/​1.2.1''​| | |[[platanus-software|platanus]]|1.2.1|''​module load platanus/​1.2.1''​| |
-|[[plink-software|plink]]|1.9|''​module load plink/1.9''​| |+|[[plink-software|plink]]|2.00-alpha|''​module load plink/2.00-alpha''​| |
 |[[polyphen-software|polyphen]]|2.2.2|''​module load polyphen/​2.2.2''​| | |[[polyphen-software|polyphen]]|2.2.2|''​module load polyphen/​2.2.2''​| |
 +|[[porechop-software|porechop]]|0.2.4|''​module load porechop/​0.2.4''​| |
 +|[[pplacer-software|pplacer]]|1.1.alpha19|''​module load pplacer/​1.1.alpha19''​| |
 |[[prank-software|prank]]|170427|''​module load prank/​170427''​| | |[[prank-software|prank]]|170427|''​module load prank/​170427''​| |
-|[[presto-software|presto]]|0.5.3|''​module load presto/0.5.3''​| |+|[[presto-software|presto]]|0.5.13|''​module load presto/0.5.13''​| |
 |primer3|2.3.6|''​module load primer3/​2.3.6''​| | |primer3|2.3.6|''​module load primer3/​2.3.6''​| |
-|[[prokka-software|prokka]]|1.11|''​module load prokka/1.11''​| |+|[[prinseq-software|prinseq]]|0.20.4|''​module load prinseq/​0.20.4''​| | 
 +|[[prodigal-software|prodigal]]|2.6.3|''​module load prodigal/​2.6.3''​| | 
 +|[[prokka-software|prokka]]|1.14.6|''​module load prokka/1.14.6''​| |
 |[[provean-software|provean]]|1.1.5|''​module load provean/​1.1.5''​| | |[[provean-software|provean]]|1.1.5|''​module load provean/​1.1.5''​| |
-|[[python-software|python]]|3.7.2|''​module load python/​3.7''​| |+|[[python-software|python]]|3.7.7|''​module load python/​3.7''​| |
 |qdd|3_beta|''​module load qdd/​3_beta''​| | |qdd|3_beta|''​module load qdd/​3_beta''​| |
 |[[qiime-software|qiime]]|1.9.1|''​module load qiime/​1.9.1''​| | |[[qiime-software|qiime]]|1.9.1|''​module load qiime/​1.9.1''​| |
-|[[qiime2-software|qiime2]]|2019.7|''​module load qiime2/​2019.7''​| | +|[[qiime2-software|qiime2]]|2019.10|''​module load qiime2/​2019.10''​| | 
-|[[quast-software|quast]]|4.5|''​module load quast/4.5''​| |+|[[quast-software|quast]]|5.0.2|''​module load quast/5.0.2''​| |
 |[[quickmerge-software|quickmerge]]|0.3|''​module load quickmerge/​0.3''​| | |[[quickmerge-software|quickmerge]]|0.3|''​module load quickmerge/​0.3''​| |
 |[[quorum-software|Quorum]]|1.1.1|''​module load quorum/​1.1.1''​| | |[[quorum-software|Quorum]]|1.1.1|''​module load quorum/​1.1.1''​| |
Line 217: Line 234:
 |[[racon-software|racon]]|1.3.1|''​module load racon/​1.3.1''​| | |[[racon-software|racon]]|1.3.1|''​module load racon/​1.3.1''​| |
 |[[rmblast-software|rmblast]]|2.2.28|''​module load rmblast/​2.2.28''​| | |[[rmblast-software|rmblast]]|2.2.28|''​module load rmblast/​2.2.28''​| |
-|rapsearch|2.10|''​module load rapsearch/​2.10''​| |+|[[rapsearch-software|rapsearch]]|2.22|''​module load rapsearch/​2.22''​| |
 |[[ratt-software|RATT]]|r18|''​module load ratt/​r18''​| | |[[ratt-software|RATT]]|r18|''​module load ratt/​r18''​| |
 |[[raxml-software|RAxML]]|8.2.12|''​module load RAxML/​8.2.12''​| | |[[raxml-software|RAxML]]|8.2.12|''​module load RAxML/​8.2.12''​| |
Line 223: Line 240:
 |[[rdp-classifier-software|RDP Classifier]]|2.11|''​module load rdp-classifier/​2.11''​| | |[[rdp-classifier-software|RDP Classifier]]|2.11|''​module load rdp-classifier/​2.11''​| |
 |repeatmasker|4.0.5|''​module load repeatmasker/​4.0.5''​| | |repeatmasker|4.0.5|''​module load repeatmasker/​4.0.5''​| |
 +|[[repseqio-software|repseqio]]|1.3.3|''​module load repseqio/​1.3.3''​| |
 |[[root-software|root]]|6.08.06|''​module load root/​6.08.06''​| | |[[root-software|root]]|6.08.06|''​module load root/​6.08.06''​| |
 |[[rrnaselector-software|rRNASelector]]|1.1|''​module load rrnaselector/​1.1''​| | |[[rrnaselector-software|rRNASelector]]|1.1|''​module load rrnaselector/​1.1''​| |
Line 233: Line 251:
 |[[scipio-software|scipio]]|1.4.1|''​module load scipio/​1.4.1''​| | |[[scipio-software|scipio]]|1.4.1|''​module load scipio/​1.4.1''​| |
 |[[scythe-software|scythe]]|0.994-beta|''​module load scythe/​0.994-beta''​| | |[[scythe-software|scythe]]|0.994-beta|''​module load scythe/​0.994-beta''​| |
 +|[[sepp-software|sepp]]|4.3.8|''​module load sepp/​4.3.8''​| |
 |[[seroba-software|seroba]]|1.0.0|''​module load seroba/​1.0.0''​| | |[[seroba-software|seroba]]|1.0.0|''​module load seroba/​1.0.0''​| |
 |seq_crumbs|0.1.8|''​module load seq_crumbs/​0.1.8''​| | |seq_crumbs|0.1.8|''​module load seq_crumbs/​0.1.8''​| |
-|[[seqkit-software|seqkit]]|0.7.2|''​module load seqkit/0.7.2''​| |+|[[seqkit-software|seqkit]]|0.11.0|''​module load seqkit/0.11.0''​| |
 |[[seqqs-software|seqqs]]|git-3d053750|''​module load seqqs/​git-3d053750''​| | |[[seqqs-software|seqqs]]|git-3d053750|''​module load seqqs/​git-3d053750''​| |
 |[[seqtk-software|seqtk]]|1.3|''​module load seqtk/​1.3''​| | |[[seqtk-software|seqtk]]|1.3|''​module load seqtk/​1.3''​| |
 |[[shannon-software|shannon]]|0.0.2|''​module load shannon/​0.0.2''​| | |[[shannon-software|shannon]]|0.0.2|''​module load shannon/​0.0.2''​| |
-|[[shasta-software|shasta]]|0.2.0|''​module load shasta/0.2.0''​| |+|[[shasta-software|shasta]]|0.4.0|''​module load shasta/0.4.0''​| |
 |[[sickle-software|sickle]]|1.33|''​module load sickle/​1.33''​| | |[[sickle-software|sickle]]|1.33|''​module load sickle/​1.33''​| |
 |[[sift-software|sift]]|4.0.3b|''​module load sift/​4.0.3b''​| | |[[sift-software|sift]]|4.0.3b|''​module load sift/​4.0.3b''​| |
Line 261: Line 280:
 |splitstree|4.11.3|''​module load splitstree/​4.11.3''​| | |splitstree|4.11.3|''​module load splitstree/​4.11.3''​| |
 |spread|1.0.6|''​module load spread/​1.0.6''​| | |spread|1.0.6|''​module load spread/​1.0.6''​| |
-|[[sratoolkit-software|sratoolkit]]|2.8.2|''​module load sratoolkit/​2.8.2''​| |+|[[squid-software|squid]]|1.9g|''​module load squid/​1.9g''​| | 
 +|[[sratoolkit-software|sratoolkit]]|2.10.0|''​module load sratoolkit/​2.10.0''​| |
 |[[sspace-software|sspace]]|3.0|''​module load sspace/​3.0''​| | |[[sspace-software|sspace]]|3.0|''​module load sspace/​3.0''​| |
 |[[sspace-longread-software|sspace-longread]]|1.1|''​module load sspace-longread/​1.1''​| | |[[sspace-longread-software|sspace-longread]]|1.1|''​module load sspace-longread/​1.1''​| |
Line 292: Line 312:
 |[[velvet-software|velvet]]|1.2.10-kmer111|''​module load velvet/​1.2.10-kmer111''​| | |[[velvet-software|velvet]]|1.2.10-kmer111|''​module load velvet/​1.2.10-kmer111''​| |
 |[[vep-software|vep]]|92.1|''​module load vep/​92.1''​| | |[[vep-software|vep]]|92.1|''​module load vep/​92.1''​| |
-|[[vsearch-software|vsearch]]|2.8.0|''​module load vsearch/2.8.0''​| |+|[[viennarna-software|viennarna]]|2.4.14|''​module load viennarna/2.4.14''​| |
 |[[virusdetect-software|virusdetect]]|1.7|''​module load virusdetect/​1.7''​| | |[[virusdetect-software|virusdetect]]|1.7|''​module load virusdetect/​1.7''​| |
 |[[vntrseek-software|vntrseek]]|1.08|''​module load vntrseek/​1.08''​| | |[[vntrseek-software|vntrseek]]|1.08|''​module load vntrseek/​1.08''​| |
 +|[[vsearch-software|vsearch]]|2.8.0|''​module load vsearch/​2.8.0''​| |
 |[[w2rap-software|w2rap]]|git-60781b6c|''​module load w2rap/​git-60781b6c''​| | |[[w2rap-software|w2rap]]|git-60781b6c|''​module load w2rap/​git-60781b6c''​| |
 |[[w2rap-contigger-software|w2rap-contigger]]|git-a43f5a05|''​module load w2rap-contigger/​git-a43f5a05''​| | |[[w2rap-contigger-software|w2rap-contigger]]|git-a43f5a05|''​module load w2rap-contigger/​git-a43f5a05''​| |
 |[[whatshap-software|whatshap]]|0.16|''​module load whatshap/​0.16''​| | |[[whatshap-software|whatshap]]|0.16|''​module load whatshap/​0.16''​| |
 |[[wise-software|wise]]|2.4.1|''​module load wise/​2.4.1''​| | |[[wise-software|wise]]|2.4.1|''​module load wise/​2.4.1''​| |
 +|[[wombat-software|wombat]]|2020-02-07|''​module load wombat/​2020-02-07''​| |
 |[[wtdbg2-software|wtdbg2]]|2.4|''​module load wtdbg2/​2.4''​| | |[[wtdbg2-software|wtdbg2]]|2.4|''​module load wtdbg2/​2.4''​| |
  
 The source code for all environment modules can be found in [[https://​github.com/​ilri/​hpc-environment-modules|ILRI'​s GitHub repository]]. The source code for all environment modules can be found in [[https://​github.com/​ilri/​hpc-environment-modules|ILRI'​s GitHub repository]].
list-of-software.1572853390.txt.gz · Last modified: 2019/11/04 10:43 by aorth