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list-of-software [2019/10/08 12:15]
aorth
list-of-software [2020/02/13 20:44] (current)
aorth
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 |[[artemis-software|artemis]]|16.0.0|''​module load act/​16.0.0''​| | |[[artemis-software|artemis]]|16.0.0|''​module load act/​16.0.0''​| |
 |[[augustus-software|augustus]]|3.3|''​module load augustus/​3.3''​| | |[[augustus-software|augustus]]|3.3|''​module load augustus/​3.3''​| |
 +|[[awscli-software|awscli]]|1.17.9|''​module load awscli/​1.17.9''​| |
 |[[bam-readcount-software|bam-readcount]]|0.8.0|''​module load bam-readcount/​0.8.0''​| | |[[bam-readcount-software|bam-readcount]]|0.8.0|''​module load bam-readcount/​0.8.0''​| |
 |[[bamtools-software|bamtools]]|2.5.1|''​module load bamtools/​2.5.1''​| | |[[bamtools-software|bamtools]]|2.5.1|''​module load bamtools/​2.5.1''​| |
Line 153: Line 154:
 |[[megax-software|megax]]|10.0.5|''​module load megax/​10.0.5''​| | |[[megax-software|megax]]|10.0.5|''​module load megax/​10.0.5''​| |
 |[[metabat-software|metabat]]|2.12.1|''​module load metabat/​2.12.1''​| | |[[metabat-software|metabat]]|2.12.1|''​module load metabat/​2.12.1''​| |
 +|[[metaphlan2-software|metaphlan2]]|2.9.5|''​module load metaphlan2/​2.9.5''​| |
 |[[metis-software|metis]]|5.1.0|''​module load metis/​5.1.0''​| | |[[metis-software|metis]]|5.1.0|''​module load metis/​5.1.0''​| |
 |[[migec-software|migec]]|1.2.4a|''​module load migec/​1.2.4a''​| | |[[migec-software|migec]]|1.2.4a|''​module load migec/​1.2.4a''​| |
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 |[[mira-software#​v4.0.2|mira ]]|4.0.2|''​module load mira/​4.0.2''​| | |[[mira-software#​v4.0.2|mira ]]|4.0.2|''​module load mira/​4.0.2''​| |
 |[[mitools-software|mitools]]|1.4|''​module load mitools/​1.4''​| | |[[mitools-software|mitools]]|1.4|''​module load mitools/​1.4''​| |
-|[[mixcr-software|mixcr]]|2.0.1|''​module load mixcr/2.0.1''​| |+|[[mixcr-software|mixcr]]|3.0.11|''​module load mixcr/3.0.11''​| |
 |mkatari-ilri|latest|''​module load mkatari-ilri/​latest''​| | |mkatari-ilri|latest|''​module load mkatari-ilri/​latest''​| |
 |[[modeller-software|modeller]]|9.17|''​module load modeller/​9.17''​| | |[[modeller-software|modeller]]|9.17|''​module load modeller/​9.17''​| |
Line 174: Line 176:
 |[[netmhcpan-software|netmhcpan]]|2.8|''​module load netmhcpan/​2.8''​| | |[[netmhcpan-software|netmhcpan]]|2.8|''​module load netmhcpan/​2.8''​| |
 |[[nextclip-software|nextclip]]|1.3.1|''​module load nextclip/​1.3.1''​| | |[[nextclip-software|nextclip]]|1.3.1|''​module load nextclip/​1.3.1''​| |
 +|[[nextflow-software|nextflow]]|19.10.0|''​module load nextflow/​19.10.0''​| |
 |[[ntcard-software|ntCard]]|1.0.0|''​module load ntCard/​1.0.0''​| | |[[ntcard-software|ntCard]]|1.0.0|''​module load ntCard/​1.0.0''​| |
 |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|''​module load ngsqctoolkit/​2.3.3''​| | |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|''​module load ngsqctoolkit/​2.3.3''​| |
 |novacraft|3.02.07|''​module load novacraft/​3.02.07''​| | |novacraft|3.02.07|''​module load novacraft/​3.02.07''​| |
 |[[oases-software|oases]]|0.2.08|''​module load oases/​0.2.08''​| | |[[oases-software|oases]]|0.2.08|''​module load oases/​0.2.08''​| |
-|[[ocaml-software#​v4.02.1|ocaml ]]|4.02.1|''​module load ocaml/​4.02.1''​| | +|[[ocaml-software#​v4.02.1|ocaml]]|4.02.1|''​module load ocaml/​4.02.1''​| | 
-|[[opam-software#​v1.2.0|opam ]]|1.2.0|''​module load opam/​1.2.0''​| |+|[[opam-software#​v1.2.0|opam]]|1.2.0|''​module load opam/​1.2.0''​| |
 |orthomcl|2.0.3|''​module load orthomcl/​2.0.3''​| | |orthomcl|2.0.3|''​module load orthomcl/​2.0.3''​| |
 +|[[orp-software|Oyster River Protocol]]|2.2.8|''​module load orp/​2.2.8''​| |
 |[[pagan-software|pagan]]|0.61|''​module load pagan/​0.61''​| | |[[pagan-software|pagan]]|0.61|''​module load pagan/​0.61''​| |
 |[[pairfq-software|pairfq]]|0.14.4|''​module load pairfq/​0.14.4''​| | |[[pairfq-software|pairfq]]|0.14.4|''​module load pairfq/​0.14.4''​| |
Line 199: Line 203:
 |[[pilon-software|pilon]]|1.23|''​module load pilon/​1.23''​| | |[[pilon-software|pilon]]|1.23|''​module load pilon/​1.23''​| |
 |[[platanus-software|platanus]]|1.2.1|''​module load platanus/​1.2.1''​| | |[[platanus-software|platanus]]|1.2.1|''​module load platanus/​1.2.1''​| |
-|[[plink-software|plink]]|1.9|''​module load plink/1.9''​| |+|[[plink-software|plink]]|2.00-alpha|''​module load plink/2.00-alpha''​| |
 |[[polyphen-software|polyphen]]|2.2.2|''​module load polyphen/​2.2.2''​| | |[[polyphen-software|polyphen]]|2.2.2|''​module load polyphen/​2.2.2''​| |
 |[[prank-software|prank]]|170427|''​module load prank/​170427''​| | |[[prank-software|prank]]|170427|''​module load prank/​170427''​| |
Line 209: Line 213:
 |qdd|3_beta|''​module load qdd/​3_beta''​| | |qdd|3_beta|''​module load qdd/​3_beta''​| |
 |[[qiime-software|qiime]]|1.9.1|''​module load qiime/​1.9.1''​| | |[[qiime-software|qiime]]|1.9.1|''​module load qiime/​1.9.1''​| |
-|[[qiime2-software|qiime2]]|2019.7|''​module load qiime2/​2019.7''​| |+|[[qiime2-software|qiime2]]|2019.10|''​module load qiime2/​2019.10''​| |
 |[[quast-software|quast]]|4.5|''​module load quast/​4.5''​| | |[[quast-software|quast]]|4.5|''​module load quast/​4.5''​| |
 |[[quickmerge-software|quickmerge]]|0.3|''​module load quickmerge/​0.3''​| | |[[quickmerge-software|quickmerge]]|0.3|''​module load quickmerge/​0.3''​| |
Line 234: Line 238:
 |[[seroba-software|seroba]]|1.0.0|''​module load seroba/​1.0.0''​| | |[[seroba-software|seroba]]|1.0.0|''​module load seroba/​1.0.0''​| |
 |seq_crumbs|0.1.8|''​module load seq_crumbs/​0.1.8''​| | |seq_crumbs|0.1.8|''​module load seq_crumbs/​0.1.8''​| |
-|[[seqkit-software|seqkit]]|0.7.2|''​module load seqkit/0.7.2''​| |+|[[seqkit-software|seqkit]]|0.11.0|''​module load seqkit/0.11.0''​| |
 |[[seqqs-software|seqqs]]|git-3d053750|''​module load seqqs/​git-3d053750''​| | |[[seqqs-software|seqqs]]|git-3d053750|''​module load seqqs/​git-3d053750''​| |
-|[[seqtk-software|seqtk]]|1.2-r102|''​module load seqtk/1.2-r102''​| |+|[[seqtk-software|seqtk]]|1.3|''​module load seqtk/1.3''​| |
 |[[shannon-software|shannon]]|0.0.2|''​module load shannon/​0.0.2''​| | |[[shannon-software|shannon]]|0.0.2|''​module load shannon/​0.0.2''​| |
-|[[shasta-software|shasta]]|0.2.0|''​module load shasta/0.2.0''​| |+|[[shasta-software|shasta]]|0.3.0|''​module load shasta/0.3.0''​| |
 |[[sickle-software|sickle]]|1.33|''​module load sickle/​1.33''​| | |[[sickle-software|sickle]]|1.33|''​module load sickle/​1.33''​| |
 |[[sift-software|sift]]|4.0.3b|''​module load sift/​4.0.3b''​| | |[[sift-software|sift]]|4.0.3b|''​module load sift/​4.0.3b''​| |
Line 260: Line 264:
 |splitstree|4.11.3|''​module load splitstree/​4.11.3''​| | |splitstree|4.11.3|''​module load splitstree/​4.11.3''​| |
 |spread|1.0.6|''​module load spread/​1.0.6''​| | |spread|1.0.6|''​module load spread/​1.0.6''​| |
-|[[sratoolkit-software|sratoolkit]]|2.8.2|''​module load sratoolkit/​2.8.2''​| |+|[[sratoolkit-software|sratoolkit]]|2.10.0|''​module load sratoolkit/​2.10.0''​| |
 |[[sspace-software|sspace]]|3.0|''​module load sspace/​3.0''​| | |[[sspace-software|sspace]]|3.0|''​module load sspace/​3.0''​| |
 |[[sspace-longread-software|sspace-longread]]|1.1|''​module load sspace-longread/​1.1''​| | |[[sspace-longread-software|sspace-longread]]|1.1|''​module load sspace-longread/​1.1''​| |
Line 298: Line 302:
 |[[whatshap-software|whatshap]]|0.16|''​module load whatshap/​0.16''​| | |[[whatshap-software|whatshap]]|0.16|''​module load whatshap/​0.16''​| |
 |[[wise-software|wise]]|2.4.1|''​module load wise/​2.4.1''​| | |[[wise-software|wise]]|2.4.1|''​module load wise/​2.4.1''​| |
 +|[[wombat-software|wombat]]|2020-02-07|''​module load wombat/​2020-02-07''​| |
 |[[wtdbg2-software|wtdbg2]]|2.4|''​module load wtdbg2/​2.4''​| | |[[wtdbg2-software|wtdbg2]]|2.4|''​module load wtdbg2/​2.4''​| |
  
 The source code for all environment modules can be found in [[https://​github.com/​ilri/​hpc-environment-modules|ILRI'​s GitHub repository]]. The source code for all environment modules can be found in [[https://​github.com/​ilri/​hpc-environment-modules|ILRI'​s GitHub repository]].
list-of-software.1570526153.txt.gz · Last modified: 2019/10/08 12:15 by aorth