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list-of-software [2018/07/22 19:22]
aorth
list-of-software [2018/10/15 16:27] (current)
aorth
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 |[[express-software|express]]|1.5.1|''​module load express/​1.5.1''​| | |[[express-software|express]]|1.5.1|''​module load express/​1.5.1''​| |
 |[[fastPHASE-software|fastPHASE]]|1.4.8|''​module load fastPHASE/​1.4.8''​| | |[[fastPHASE-software|fastPHASE]]|1.4.8|''​module load fastPHASE/​1.4.8''​| |
-|[[fastqc-software|fastqc]]|0.11.5|''​module load fastqc/​0.11.5''​| |+|[[fastqc-software|fastqc]]|0.11.7|''​module load fastqc/​0.11.7''​| |
 |[[faststructure-software|fastSTRUCTURE]]|1.0|''​module load fastSTRUCTURE/​1.0''​| | |[[faststructure-software|fastSTRUCTURE]]|1.0|''​module load fastSTRUCTURE/​1.0''​| |
 |[[fastx-toolkit-software|fastx_toolkit]]|0.0.13|''​module load fastx_toolkit/​0.0.13''​| | |[[fastx-toolkit-software|fastx_toolkit]]|0.0.13|''​module load fastx_toolkit/​0.0.13''​| |
Line 85: Line 85:
 |[[freebayes-software|FreeBayes ]]|1.0.2|''​module load freebayes/​1.0.2''​| | |[[freebayes-software|FreeBayes ]]|1.0.2|''​module load freebayes/​1.0.2''​| |
 |[[gassflow-software|GassFlow ]]|1.0|''​module load gassflow/​1.0''​| | |[[gassflow-software|GassFlow ]]|1.0|''​module load gassflow/​1.0''​| |
-|[[gatk-software|GATK ]]|3.7.0|''​module load gatk/3.7.0''​| |+|[[gatk-software|GATK ]]|4.0.10.1|''​module load gatk/4.0.10.1''​| |
 |[[gapfiller-software|gapfiller]]|1.10|''​module load gapfiller/​1.10''​| | |[[gapfiller-software|gapfiller]]|1.10|''​module load gapfiller/​1.10''​| |
 |[[geneid-software|geneid]]|1.4.4|''​module load geneid/​1.4.4''​| | |[[geneid-software|geneid]]|1.4.4|''​module load geneid/​1.4.4''​| |
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 |[[hmmer-software|hmmer]]|3.1b2|''​module load hmmer/​3.1b2''​| | |[[hmmer-software|hmmer]]|3.1b2|''​module load hmmer/​3.1b2''​| |
 |[[hpg-variant-software|hpg-variant]]|1.0|''​module load hpg-variant/​1.0''​| | |[[hpg-variant-software|hpg-variant]]|1.0|''​module load hpg-variant/​1.0''​| |
-|[[hisat2-software|hisat2]]|2.0.5|''​module load hisat2/2.0.5''​| |+|[[hisat2-software|hisat2]]|2.1.0|''​module load hisat2/2.1.0''​| |
 |[[htseq-software|htseq]]|0.6.1|''​module load htseq/​0.6.1''​| | |[[htseq-software|htseq]]|0.6.1|''​module load htseq/​0.6.1''​| |
 |[[htslib-software|htslib]]|1.8|''​module load htslib/​1.8''​| | |[[htslib-software|htslib]]|1.8|''​module load htslib/​1.8''​| |
Line 174: Line 174:
 |phred|0.990722.f|''​module load phred/​0.990722.f''​| | |phred|0.990722.f|''​module load phred/​0.990722.f''​| |
 |[[phylip-software|phylip]]|3.696|''​module load phylip/​3.696''​| | |[[phylip-software|phylip]]|3.696|''​module load phylip/​3.696''​| |
-|[[phyml-software|phyml]]|20120412|''​module load phyml/20120412''​| |+|[[phyml-software|phyml]]|3.3.20180621|''​module load phyml/3.3.20180621''​| |
 |[[picard-software|picard]]|2.17.0|''​module load picard/​2.17.0''​| | |[[picard-software|picard]]|2.17.0|''​module load picard/​2.17.0''​| |
 |[[picrust-software#​v1.0.0|picrust]]|1.0.0|''​module load picrust/​1.0.0''​| | |[[picrust-software#​v1.0.0|picrust]]|1.0.0|''​module load picrust/​1.0.0''​| |
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 |rapsearch|2.10|''​module load rapsearch/​2.10''​| | |rapsearch|2.10|''​module load rapsearch/​2.10''​| |
 |[[ratt-software|RATT]]|r18|''​module load ratt/​r18''​| | |[[ratt-software|RATT]]|r18|''​module load ratt/​r18''​| |
-|[[raxml-software|RAxML]]|8.2.0|''​module load RAxML/8.2.0''​| |+|[[raxml-software|RAxML]]|8.2.12|''​module load RAxML/8.2.12''​| |
 |[[ray-software|ray]]|2.3.1|''​module load ray/​2.3.1''​| | |[[ray-software|ray]]|2.3.1|''​module load ray/​2.3.1''​| |
 |[[rdp-classifier-software|RDP Classifier]]|2.11|''​module load rdp-classifier/​2.11''​| | |[[rdp-classifier-software|RDP Classifier]]|2.11|''​module load rdp-classifier/​2.11''​| |
Line 239: Line 239:
 |[[stacks-software|stacks]]|1.24|''​module load stacks/​1.24''​| | |[[stacks-software|stacks]]|1.24|''​module load stacks/​1.24''​| |
 |staden|2.0.0b8|''​module load staden/​2.0.0b8''​| | |staden|2.0.0b8|''​module load staden/​2.0.0b8''​| |
-|[[star-software|star]]|2.5.2b|''​module load star/2.5.2b''​| |+|[[star-software|star]]|2.5.3a|''​module load star/2.5.3a''​| |
 |[[structure-software|structure]]|2.3.4|''​module load structure/​2.3.4''​| ​ | |[[structure-software|structure]]|2.3.4|''​module load structure/​2.3.4''​| ​ |
 |[[stringtie-software|stringtie]]|1.3.4d|''​module load stringtie/​1.3.4d''​| | |[[stringtie-software|stringtie]]|1.3.4d|''​module load stringtie/​1.3.4d''​| |
 +|[[subread-software|subread]]|1.6.2|''​module load subread/​1.6.2''​| |
 |svmlight|V6.02|''​module load svmlight/​V6.02''​| | |svmlight|V6.02|''​module load svmlight/​V6.02''​| |
 |tabix|git-76b4bbdf|''​module load tabix/​git-76b4bbdf''​| | |tabix|git-76b4bbdf|''​module load tabix/​git-76b4bbdf''​| |
list-of-software.1532276548.txt.gz · Last modified: 2018/07/22 19:22 by aorth