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kraken-software [2016/08/16 08:21] (current)
joguya created
Line 1: Line 1:
 +====== kraken ======
  
 +A taxonomic sequence classifier that assigns taxonomic labels to short DNA reads.
 +
 +===== Information =====
 +
 +  * Version: 0.10.5
 +  * Added: August, 2016
 +  * Link: https://​ccb.jhu.edu/​software/​kraken/​
 +
 +===== Usage =====
 +
 +See which versions of kraken are available:
 +<​code>​$ module avail kraken</​code>​
 +
 +Load kraken
 +<​code>​$ module load kraken/​0.10.5</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +
 +<​code>​
 +$ cd /tmp/
 +$ wget https://​github.com/​DerrickWood/​kraken/​archive/​v0.10.5-beta.tar.gz
 +$ tar -xvf v0.10.5-beta.tar.gz
 +$ cd kraken-0.10.5-beta/​
 +$ sudo mkdir -p /​export/​apps/​kraken/​0.10.5/​
 +$ sudo chown joguya:​joguya /​export/​apps/​kraken/​0.10.5/​
 +$ scl enable devtoolset-2 bash
 +$ ./​install_kraken.sh /​export/​apps/​kraken/​0.10.5/​
 +$ sudo chown -R root:root /​export/​apps/​kraken/​0.10.5/​
 +</​code>​
kraken-software.txt · Last modified: 2016/08/16 08:21 by joguya