A taxonomic sequence classifier that assigns taxonomic labels to short DNA reads.

• Version: 0.10.5
• Added: August, 2016
• Link: https://ccb.jhu.edu/software/kraken/

See which versions of kraken are available:

$ module avail kraken

Load kraken

$ module load kraken/0.10.5

Notes from the sysadmin during installation:

$ cd /tmp/
$ wget https://github.com/DerrickWood/kraken/archive/v0.10.5-beta.tar.gz
$ tar -xvf v0.10.5-beta.tar.gz
$ cd kraken-0.10.5-beta/
$ sudo mkdir -p /export/apps/kraken/0.10.5/
$ sudo chown joguya:joguya /export/apps/kraken/0.10.5/
$ scl enable devtoolset-2 bash
$ ./install_kraken.sh /export/apps/kraken/0.10.5/
$ sudo chown -R root:root /export/apps/kraken/0.10.5/