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kraken-software

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kraken

A taxonomic sequence classifier that assigns taxonomic labels to short DNA reads.

Information

Usage

See which versions of kraken are available:

$ module avail kraken

Load kraken

$ module load kraken/0.10.5

Installation

Notes from the sysadmin during installation:

$ cd /tmp/
$ wget https://github.com/DerrickWood/kraken/archive/v0.10.5-beta.tar.gz
$ tar -xvf v0.10.5-beta.tar.gz
$ cd kraken-0.10.5-beta/
$ sudo mkdir -p /export/apps/kraken/0.10.5/
$ sudo chown joguya:joguya /export/apps/kraken/0.10.5/
$ scl enable devtoolset-2 bash
$ ./install_kraken.sh /export/apps/kraken/0.10.5/
$ sudo chown -R root:root /export/apps/kraken/0.10.5/
kraken-software.txt · Last modified: 2016/08/16 08:21 by joguya