KmerGenie estimates the best k-mer length for genome de novo assembly.

• Version: 1.7038
• Added: February, 2017
• Link: http://kmergenie.bx.psu.edu/

See which versions of kmergenie are available:

$ module avail kmergenie

Load kmergenie

$ module load kmergenie/1.7038

Notes from the sysadmin during installation:

$ cd /tmp
$ wget -qO- http://kmergenie.bx.psu.edu/kmergenie-1.7038.tar.gz | tar xzv
$ cd kmergenie-1.7038
$ sudo mkdir -p /export/apps/kmergenie/1.7038/
$ sudo chown -R joguya:joguya /export/apps/kmergenie/1.7038/
$ make
$ module load python/2.7.8 ntcard/1.0.0
$ python setup.py install --prefix=/export/apps/kmergenie/1.7038/
$ sudo chown -R root:root /export/apps/kmergenie/1.7038/